View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_low_8 (Length: 468)
Name: NF16808_low_8
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_low_8 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 129 - 452
Target Start/End: Original strand, 47371715 - 47372039
Alignment:
| Q |
129 |
catgaaagcaaaaccattaaaaagtactgaccttattctgctatattacaagcaacaaaccagtaaaacgcaacaagcattaacaaa-catcaaaatagt |
227 |
Q |
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| T |
47371715 |
catgaaagcaaaaccattaaaaagtaatgaccttattctgctatattacaagtaacaaaccagtaaaacgcaacaagcattaacaaaacatcaaaatagt |
47371814 |
T |
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| Q |
228 |
aaatcggcaagcctttgaaattatgaaatttatcaagccacatcataatttggaaaaactaaacgatttaaaagtattttggtccttaacgtttgtgtac |
327 |
Q |
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| T |
47371815 |
aaatcggcaagcctttgaaattatgaaatttatcaagccacatcataatttggaaaaactaaacgatttaaaagtattttggtccttaacgtttgtgtac |
47371914 |
T |
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| Q |
328 |
gtactatgaatttgtgtgccaacctgtttgttaacatggcatggcatcacttaactgagactaatctctacattcaggaatcatgcggtccataacacga |
427 |
Q |
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| T |
47371915 |
gtactatgaatttgtgtgccaacctgtttgttaacatggcatggcatcacttaactgagactaatctctacattcaggaatcatgcggtccataacacga |
47372014 |
T |
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| Q |
428 |
gttgattatttttagggttaatttt |
452 |
Q |
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| T |
47372015 |
gttgattatttttagggttaatttt |
47372039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 47370763 - 47370884
Alignment:
| Q |
18 |
cttataaacaaatgttcatgcaatattttgtctggtgtgaaactcttttaacaacttttgatatttttaggctttaacccggtgattttggcttctaccc |
117 |
Q |
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| T |
47370763 |
cttataaacaaatgttcatgccatgttttgtctggtgtgaaactcttttaacaacttttgatatttttaggctttaacccggtgattttggcttctaccc |
47370862 |
T |
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| Q |
118 |
ggtctgaaacacatgaaagcaa |
139 |
Q |
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| T |
47370863 |
ggtctgaaacacatgaaagcaa |
47370884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 49142972 - 49142923
Alignment:
| Q |
16 |
cacttataaacaaatgttcatgcaatattttgtctggtgtgaaactcttt |
65 |
Q |
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| T |
49142972 |
cacttataaacacatgttcatgccatattttgtctgatgtgggactcttt |
49142923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 102207 - 102256
Alignment:
| Q |
16 |
cacttataaacaaatgttcatgcaatattttgtctggtgtgaaactcttt |
65 |
Q |
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| T |
102207 |
cacttataaacacatgtttaggtaatattttgtctgctgtgaaactcttt |
102256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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