View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16809_high_16 (Length: 380)

Name: NF16809_high_16
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16809_high_16
NF16809_high_16
[»] chr2 (1 HSPs)
chr2 (10-300)||(18629893-18630185)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 18630185 - 18629893
Alignment:
Q  10 atgaacatatagctagtgtgaaggtcttatttctcttgagtt-gtggatc-tttgaatatcaaaatcaagtttgctaccctatcacctatgattgatgat 107  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18630185 atgaacatatagctagtgtgaaggtcttatttctcttgattttgtggatcctttgaatatcaaaatcaagtttgctaccctatcacctatgattgatgat 18630086  T
Q  108 accaaaaatagaaaacccccataaatgcatgtgacttggtcaacacaacaaatcccttaaacctatatcaactccaaaattatctaaccaacttcaacta 207  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18630085 accaaaaatagaacacccccacaaatacatgtgacttggtcaacacaacaaatcccttaaacctatatcaactccaaaattatctaaccaacttcaacta 18629986  T
Q  208 tttccatgcaaactctattcttagaatccaacaccaatttgtggcaaaacaacatcatcaccaatcttctctctctccacattaccaacatcc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18629985 tttccatgcaaactctattcttagaatccaacaccaatttgtggcaaaacaacatcatcaccaatcttctctctctccacattaccaacatcc 18629893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University