View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_high_17 (Length: 379)
Name: NF16809_high_17
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 362
Target Start/End: Complemental strand, 38712472 - 38712122
Alignment:
| Q |
12 |
cacagatctaaacatacatctaccatctcctggtattcctgcaacaacnnnnnnncgtttcaaaattaagtagaatcagaaaaattaataataagctgca |
111 |
Q |
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| T |
38712472 |
cacagatctaaacatacatctaccatctcctggtattcctgcaacaacaaaaaaacgtttcaaaattaagtagaatcagaaaaattaataataagctgca |
38712373 |
T |
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| Q |
112 |
aagcacgtgcatatttttcaagtgatatagtaactcctctccatttgaaattggatttataggtttataaccatgcagttactatatactagtactacta |
211 |
Q |
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| T |
38712372 |
aagcacgtgcatatttttcaagtgatacagtaactcctctccatttgaaattggatttataggtttataaccatgcagttactatatactagtactacta |
38712273 |
T |
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| Q |
212 |
aatcatcacttctaatttaacaaaatgatgctttcgcgagaaatttaatcgaatccaagcactgtaagaataaagaagtttttcaggcagaatagtcata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38712272 |
aatcatcacttctaatttaacaaaatgatgctttcgtgagaaatttaatcgaatccaagcactgtaagaataaagaagtttttcaagcagaatagtcata |
38712173 |
T |
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| Q |
312 |
aagaagtaaaatgaaataattaagacatacgaattattggaaggttgctac |
362 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38712172 |
aagaagtaaaattaaataattaagacatacgaattattggaaggttgctac |
38712122 |
T |
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