View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_high_20 (Length: 345)
Name: NF16809_high_20
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_high_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 8187292 - 8187635
Alignment:
| Q |
1 |
tgctataatgtgcacactgat-ttgttgcctcgatgatattttcaaggccatcgctgagaaagataattgtcccacattggtataacaaaaagaggaacc |
99 |
Q |
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| T |
8187292 |
tgctataatgtgcatcctgatgttgttgactcgatgatattttcaaggccatcgctgagaaagataattgtcccaccttggtataacaaaaagaggaacc |
8187391 |
T |
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| Q |
100 |
tcgtcttgccatctactctggaactgctatgaagtatgaaatgtaagannnnnnnnnnnnnnnnacagatttatatctctgggaaattacttcaaaaaat |
199 |
Q |
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| T |
8187392 |
tcgtcttgccatctactctggaactgctatgaagtatgaaatgtgagattttttgtttttgtttacagatttatatctctgagaaattacttcaaaaaat |
8187491 |
T |
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| Q |
200 |
gtgtatatgctcatcagtctacatgacaattgcttaagttgttgtgtaatgcaagtcattgggtatttctttgtgtcgtactttctttcgagaaccaatt |
299 |
Q |
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| T |
8187492 |
gtgtatttgctcatcagtctacatgacaattgcttaagttgttgtgtaatgcaagtcattgggtatttc--tgtgtcctactttctttcgagaaccaatt |
8187589 |
T |
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| Q |
300 |
ttatgttatttcttttttggaccaagcttacaaacattaacctata |
345 |
Q |
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| T |
8187590 |
ttatgttatttcttttttggaccaagcttacaaacattaacctata |
8187635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 659584 - 659531
Alignment:
| Q |
22 |
ttgttgcctcgatgatattttcaaggccatcgctgagaaagataattgtcccac |
75 |
Q |
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| T |
659584 |
ttgttgcctcgatggtattttcaaggccatcgttgaaaaagataattgttccac |
659531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 34936386 - 34936435
Alignment:
| Q |
22 |
ttgttgcctcgatgatattttcaaggccatcgctgagaaagataattgtc |
71 |
Q |
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| T |
34936386 |
ttgttacctcgatgataacttcaaggccattgttgagaaagataattgtc |
34936435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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