View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_high_28 (Length: 287)
Name: NF16809_high_28
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 53869990 - 53869720
Alignment:
| Q |
7 |
agagaaacaatgagtggttgtctagaagatgatgggtatgcaactgaaattagaaatgctacaaagaatttcaaaatgaatattgacatcttcaagagat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53869990 |
agagaaacaatgagtggttgtctagaagatgatgggtatgcaactgaaattagaaatgctacaaagaatttcaaaatgaatattgacatcttcaagagat |
53869891 |
T |
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| Q |
107 |
acttgagtaagagcaagtgaagaaaagacccaccattagcggtggt------ggtgttgaacattgactaaagattatgggtgagagagaagatctgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||| || |
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| T |
53869890 |
acttgagtaagagcaagtgaagaaaagacccaccattagcggtggtggtggtggtgttgaacattgactaaaaattatgggtgagtgagaagacctgctg |
53869791 |
T |
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| Q |
201 |
gtttctgcaataaggttgggtcnnnnnnnnncggaaaagaatctatcaatacacttccaataagttagttg |
271 |
Q |
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| T |
53869790 |
gtttctgcaataaggttgggtcttttttttccgaaaaagaatctatcaatgcagttccaataagttagttg |
53869720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 5277765 - 5277495
Alignment:
| Q |
7 |
agagaaacaatgagtggttgtctagaagatgatgggtatgcaactgaaattagaaatgctacaaagaatttcaaaatgaatattgacatcttcaagagat |
106 |
Q |
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| T |
5277765 |
agagaaacaatgagtggttgtctagaagatgatgggtatgcaactgaaattagaaatgctacaaagaatttcaaaataaatattgacatcttcaagagat |
5277666 |
T |
|
| Q |
107 |
acttgagtaagagcaagtgaagaaaagacccaccattagcggtggt------ggtgttgaacattgactaaagattatgggtgagagagaagatctgttg |
200 |
Q |
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| T |
5277665 |
acttgagtaagagcaagtgaagaaaagacccaccattagcggtggtggtggtggtgttgaacattgactaaaaattatgggtgagagagaagacctgctg |
5277566 |
T |
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| Q |
201 |
gtttctgcaataaggttgggtcnnnnnnnnncggaaaagaatctatcaatacacttccaataagttagttg |
271 |
Q |
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| T |
5277565 |
gtttctgcaataaggttgggtcttttttttccgaaaaagaatctatcaatgcagttccaataagttagttg |
5277495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 40727308 - 40727038
Alignment:
| Q |
7 |
agagaaacaatgagtggttgtctagaagatgatgggtatgcaactgaaattagaaatgctacaaagaatttcaaaatgaatattgacatcttcaagagat |
106 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40727308 |
agagaaacaatgaggggttgtctagaagatgatgggtatgcaactgaaattagaaatgctacaaagaatttcaaaataaatattgacatcttcaagagat |
40727209 |
T |
|
| Q |
107 |
acttgagtaagagcaagtgaagaaaagacccaccatta------gcggtggtggtgttgaacattgactaaagattatgggtgagagagaagatctgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| || || |
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| T |
40727208 |
acttgagtaagagcaagtgaagaaaagacccaccattagcggcggcggtggtggtgttgaacattgactagaaattatgggtgagagagaagacctactg |
40727109 |
T |
|
| Q |
201 |
gtttctgcaataaggttgggtcnnnnnnnnncggaaaagaatctatcaatacacttccaataagttagttg |
271 |
Q |
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| T |
40727108 |
gtttctgcaacaaggttgggtcttttttttccaaaaaagaatctatcaatgcagttccaataagttagttg |
40727038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 625149 - 625369
Alignment:
| Q |
7 |
agagaaacaatgagtggttgtctagaagatgatgggtatgcaactgaaattagaaatgctacaaagaatttcaaaatgaatattgacatcttcaagagat |
106 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
625149 |
agagaaacaatgagtggttgt-tagaagatgatgggtatgcaactgaaattagaaatactacaaagaatttcaaaatgaatattgacatcttcaagagat |
625247 |
T |
|
| Q |
107 |
acttgagtaagagcaagtgaagaaaagacccaccattagc------ggtggtggtgttgaacattgactaaagattatgggtgagagagaagatctgttg |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| || |
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| T |
625248 |
acttgagtaagagcaagtgaagaaaagagccaccattagcggtggtggtggtggtgttgaacattgactaaaaattatgggtgagagagaagaactgctg |
625347 |
T |
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| Q |
201 |
gtttctgcaataaggttgggtc |
222 |
Q |
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||||||||||||||| |||||| |
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| T |
625348 |
gtttctgcaataaggatgggtc |
625369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 625393 - 625430
Alignment:
| Q |
234 |
gaaaagaatctatcaatacacttccaataagttagttg |
271 |
Q |
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||||||||||||||||| || ||||||||||||||||| |
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| T |
625393 |
gaaaagaatctatcaatgcagttccaataagttagttg |
625430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 51975644 - 51975596
Alignment:
| Q |
108 |
cttgagtaagagcaagtgaagaaaagacccaccattagcggtggtggtg |
156 |
Q |
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|||||| |||||||||||| ||||||||||||| |||| |||||||||| |
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| T |
51975644 |
cttgagcaagagcaagtgaggaaaagacccaccgttagaggtggtggtg |
51975596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 41905559 - 41905652
Alignment:
| Q |
97 |
ttcaagagatacttgagtaagagcaagtgaagaaaagacccaccattagcggtggtggtgttgaacattgactaaagattatgggtgagagaga |
190 |
Q |
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|||||||||| |||||| |||| ||| |||||||||||| || | |||| ||| |||||||||| || |||| ||| || || | ||||||||| |
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| T |
41905559 |
ttcaagagatgcttgagcaagaacaattgaagaaaagacacatcgttagtggtagtggtgttgagcaatgacaaaaaataatagttgagagaga |
41905652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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