View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16809_high_37 (Length: 239)
Name: NF16809_high_37
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_high_37 |
 | |
|
| [»] scaffold0920 (3 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 11643461 - 11643251
Alignment:
| Q |
14 |
ttctatatgactctcctcctgtccatcatagcacaaactttattttcataatcacaagattcctctttgaccattcgattcatactaatcctatatgatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11643461 |
ttctatatgactctcctcctgtccatcatagcacaaactttattttcataatcacaagaatcctctttgaccattcgattcatactaaccctatatgatg |
11643362 |
T |
|
| Q |
114 |
acacaaggtctatgttgagatcatatgaaattatctgacatttcaaagattattgaccaagtgacaattttcgattatgtaattcgaacttattctaata |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11643361 |
acacaaggtctatgttgagatcatatgaaattatctgacatttcaaagattattgaccaagtgacaattttcgattatgtaattcgaacttattctaata |
11643262 |
T |
|
| Q |
214 |
ttggttcgaat |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
11643261 |
ttggttcgaat |
11643251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 11639934 - 11639775
Alignment:
| Q |
14 |
ttctatatgactctcctcctgtccatcatagcacaaactttattttcataatcacaagattcctctttgaccattcgattcatactaatcctatatgatg |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
11639934 |
ttctatatgactctcctcttgtccatcatagcacaaactttattttcataatcacaagaatcctctttgaccattcgattcatactaaccttatatgatg |
11639835 |
T |
|
| Q |
114 |
acacaaggtctatgttgagatcatatgaaattatctgacatttcaaagattattgaccaa |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11639834 |
acacaaggtctatgttgagatcatatgaaattatctgacatctcaaagattattgaccaa |
11639775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 11590602 - 11590487
Alignment:
| Q |
14 |
ttctatatgactctcctcctgtccatcat---agcacaaactttattttcataatcacaagattcctctttgaccattcgattcatactaatcctatatg |
110 |
Q |
| |
|
||||||||| |||||||| ||| |||||| |||||| | |||||||||||||||| |||| | ||||||||||||| | || |||||||||||| |
|
|
| T |
11590602 |
ttctatatggctctcctcttgtacatcattaaagcacacattttattttcataatcataagacttctctttgaccattgg-----tagtaatcctatatg |
11590508 |
T |
|
| Q |
111 |
atgacacaaggtctatgttga |
131 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11590507 |
atgacacaaggtctatgttga |
11590487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 11640028 - 11639952
Alignment:
| Q |
14 |
ttctatatgactctcctcc--tgtccatcat---agcacaaactttattttcataatcacaagattcctctttgacc |
85 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
11640028 |
ttctatatgactctcctctcttgtacatcattaaagcacaaattttaatttcataatcacaagactcctctttgacc |
11639952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0920 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: scaffold0920
Description:
Target: scaffold0920; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 3547 - 3706
Alignment:
| Q |
14 |
ttctatatgactctcctcctgtccatcatagcacaaactttattttcataatcacaagattcctctttgaccattcgattcatactaatcctatatgatg |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
3547 |
ttctatatgactctcctcttgtccatcatagcacaaactttattttcataatcacaagaatcctctttgaccattcgattcatactaaccttatatgatg |
3646 |
T |
|
| Q |
114 |
acacaaggtctatgttgagatcatatgaaattatctgacatttcaaagattattgaccaa |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3647 |
acacaaggtctatgttgagatcatatgaaattatctgacatctcaaagattattgaccaa |
3706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0920; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 222 - 277
Alignment:
| Q |
170 |
ccaagtgacaattttcgattatgtaattcgaacttattctaatattggttcgaatt |
225 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
222 |
ccaagtgacaatttccgattatgtaattcgaacttattctaatattggttcgaatt |
277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0920; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 3453 - 3529
Alignment:
| Q |
14 |
ttctatatgactctcctcc--tgtccatcat---agcacaaactttattttcataatcacaagattcctctttgacc |
85 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
3453 |
ttctatatgactctcctctcttgtacatcattaaagcacaaattttaatttcataatcacaagactcctctttgacc |
3529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University