View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_high_38 (Length: 235)
Name: NF16809_high_38
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_high_38 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 16222726 - 16222487
Alignment:
| Q |
1 |
ctctttaaagaaaatattgtcctcaaattatattttcttttatttagcaagaaataaataatattgttatgacaaagctaaatcagttctctctcttatg |
100 |
Q |
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| T |
16222726 |
ctctttaaagaaaatattgtcctcaaattatattttcttttatttagcaagaaataaataatattgttatgacaaagctaaatcagttctctctcttatg |
16222627 |
T |
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| Q |
101 |
aaagtatgaaaggtatact-----gnnnnnnnnnntatcaattatcaacggagtcaatactacctatgagttgacccttagtaacaaaagaaaatctgat |
195 |
Q |
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| T |
16222626 |
aaagtatgaaaggtatactcaaaaaaaaaaaaaaaaatcaattatcaacggattcaatactacctatgagttgacccttagtaacaaaagaaaatctgat |
16222527 |
T |
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| Q |
196 |
gttaccaaggaattataattaatgtttaagaaatattccg |
235 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |
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| T |
16222526 |
gttaccaaggaattataattaatggttaagaaatattccg |
16222487 |
T |
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