View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_high_5 (Length: 516)
Name: NF16809_high_5
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 247 - 496
Target Start/End: Complemental strand, 53983744 - 53983492
Alignment:
| Q |
247 |
gaattgtttgataacgtgactcattatctagtttttgtgagtatctctttaatttttaagtagagtcattccttacttttaagaaatgaaaatgatctc- |
345 |
Q |
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| T |
53983744 |
gaattgtttgataacgtgactcattatctagtttttgtgagtatctctttaatttttaagtagagtcattccttacttttaagaaatgaaaatgatctca |
53983645 |
T |
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| Q |
346 |
--ttagaaagcaggtgaagatttccaaagaataaaatactattcttgaaggtaagatgtataaaattatttggcaaaatttggtgcaagggatgatcaag |
443 |
Q |
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| T |
53983644 |
acttagaaagcaggtgaagatttccaaagaataaaatactattcttgaaggtaagatgtataaaattatttggcaaaatttggtgcaagggatgatcaag |
53983545 |
T |
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| Q |
444 |
agtttgtcattatgcaagcctcctcgagctttatgtcttatctttctttgcgg |
496 |
Q |
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| T |
53983544 |
agtttgtcattatgcaagcctcctccagctttatgtcttatctttctttgcgg |
53983492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 53983958 - 53983780
Alignment:
| Q |
12 |
agcagagagagtgagcatgaaattatctggatccaactgcaaggattatttcaatctnnnnnnnnnnnnnn-tcaaacagccaatttcgcaacaaaagat |
110 |
Q |
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| T |
53983958 |
agcaaagagagtgagcatgaaattatctggatccaactacaaggattatttcaatctaaaaaaaataaaaaataaaacagccaatttcacaacaaaagat |
53983859 |
T |
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| Q |
111 |
gtataagatccactagaacttgaacattttggaaagggtcgggggtgcatgttaggactccatttaaattgagatagat |
189 |
Q |
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| T |
53983858 |
gtataagatccactagaacttgaacattttggaaagggtcgggggtgcatgtaaggactccatttaaattgagatagat |
53983780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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