View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_high_9 (Length: 473)
Name: NF16809_high_9
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 267052 - 267508
Alignment:
| Q |
1 |
gggatcaaacctgatgttattacctacagagttctaatcgatgggagattaaaagttgataacttccacgatgcaatcagactcttcaacgaaattattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
267052 |
gggatcaaacctgatgttattacctacagagttctaatcgatgggagattaaaagttgataacttccacgatgcaatcagactcttcaatgaaattattg |
267151 |
T |
|
| Q |
101 |
acggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatgaagaaagcggttatatttgtacaatgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
267152 |
acggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatgaagaaagcggttatatttgtacaatgaaa |
267251 |
T |
|
| Q |
201 |
tgtcttccaagggaatgaaaccatcaacggtcttttaacttaatttaaagtttctaacaggttgtttatcttgttttcggttcaaattaatcttgcttta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
267252 |
tgtcttccaagggaatgaaaccatcaacggtcttttaacttaatttaaagtttctaacaggttgtttatcttgttttcggttcaaattaatcttgcttta |
267351 |
T |
|
| Q |
301 |
ccaaaaacgaaaagcgcaatttgtccaagccaggttgttcacttcgtggtgtgctataattatctctctatcatatcatatcatgtcaatcacagtgaag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
267352 |
ccaaaaacgaaaagcgcaatttgtccaagccaggttgttcacttcttggtgtgctataattatctctctatcatatcatatcatgtcaatcacaatgaag |
267451 |
T |
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| Q |
401 |
caaacacaatgtcaagttcaaagtccaacctacactcacgctacgctcgccacaagt |
457 |
Q |
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| T |
267452 |
caaacacaatgtcaagttcaaagtccaacctacactcacgctacgctcgccacaagt |
267508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 13587227 - 13587361
Alignment:
| Q |
88 |
aacgaaattattgacggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatgaagaaagcggttatat |
187 |
Q |
| |
|
||||||||||||||| |||||||| |||| | |||||| |||||||||||||||||| ||||| |||||||| | ||||||| | ||||| | | ||| |
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| T |
13587227 |
aacgaaattattgaccgaggactagaaccaggtaatgtaacatacactgctctagttcctggcttgttaaacagtgggcacacggagaaatcaataata- |
13587325 |
T |
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| Q |
188 |
ttgtacaatgaaatgtcttccaagggaatgaaacca |
223 |
Q |
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||||| |||||||| |||||||| | ||||| |||| |
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| T |
13587326 |
ttgtataatgaaatatcttccaatgaaatgatacca |
13587361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 6783362 - 6783236
Alignment:
| Q |
91 |
gaaattattgacggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatgaagaaagcggttatatttg |
190 |
Q |
| |
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|||||||||||| ||||||| |||| |||| || ||||||||||||||| ||| ||| ||||||||||| |||| | | ||| ||| ||||| | |
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| T |
6783362 |
gaaattattgaccaaggactaaaaccagatagagtaacatacactgctctaatttggggcttgttaaacggaaggcaaaaggagatagcaattata-tac |
6783264 |
T |
|
| Q |
191 |
tacaatgaaatgtcttccaagggaatga |
218 |
Q |
| |
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|| |||||||||||||||||||||||| |
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| T |
6783263 |
tatgatgaaatgtcttccaagggaatga |
6783236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 41627960 - 41628112
Alignment:
| Q |
70 |
gatgcaatcagactcttcaacgaaattattgacggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcaca |
169 |
Q |
| |
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|||||||| ||||||||||| ||| |||| | |||||||| |||| |||||||| |||||||||||| || |||| ||| |||||||| | ||| || |
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| T |
41627960 |
gatgcaattagactcttcaatgaagttatgaaaagaggactagaaccagataatgtaacatacactgctttattttcgggcttgttaaacagtgggaact |
41628059 |
T |
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| Q |
170 |
tgaagaaagcggttatatttgtacaatgaaatgtcttccaagggaatgaaacca |
223 |
Q |
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||| ||| |||| | ||||| ||||||||||||||||||||||||| |||| |
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| T |
41628060 |
cagagatagcagttaca-ttgtataatgaaatgtcttccaagggaatgacacca |
41628112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 51283720 - 51283868
Alignment:
| Q |
73 |
gcaatcagactcttcaacgaaattattgacggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatga |
172 |
Q |
| |
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||||| ||||||||||| || ||||| || |||||||| |||| |||||||| |||||||||||| || |||| ||| |||||||| | |||||| |
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| T |
51283720 |
gcaattagactcttcaat-aagttattaacagaggactagaaccagataatgtaacatacactgctttattttcgggcttgttaaacagtgggcacccag |
51283818 |
T |
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| Q |
173 |
agaaagcggttatatttgtacaatgaaatgtcttccaagggaatgaaacca |
223 |
Q |
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||| || |||| | ||||| ||||||||||||||||||||||||| |||| |
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| T |
51283819 |
agatagaagttaca-ttgtataatgaaatgtcttccaagggaatgacacca |
51283868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 51282078 - 51282131
Alignment:
| Q |
1 |
gggatcaaacctgatgttattacctacagagttctaatcgatgggagattaaaa |
54 |
Q |
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|||||||||||||||| |||||||||| ||||||| | ||||||| ||||||| |
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| T |
51282078 |
gggatcaaacctgatgaaattacctacacagttctacttgatgggaaattaaaa |
51282131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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