View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_1 (Length: 650)
Name: NF16809_low_1
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 495 - 616
Target Start/End: Original strand, 20788196 - 20788317
Alignment:
| Q |
495 |
tactatcctaagctatcaagaatggtaggacagtctgcataaatgcctcataggaaaatgttgcagagccagtatacccagtatccttctccttgaattt |
594 |
Q |
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| T |
20788196 |
tactatcctaagctatcaggaatggcaggacggtcagcataaacgcctcataggaaaatgttgcagagccggtataccctgtatccttctccttgaattt |
20788295 |
T |
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| Q |
595 |
gtccgttagtccctgcaataca |
616 |
Q |
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| T |
20788296 |
gtccgttagtccctgaaataca |
20788317 |
T |
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Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 353 - 497
Target Start/End: Original strand, 45333461 - 45333607
Alignment:
| Q |
353 |
gtgttgtaaagaacacct---catcactcaagtaaaatgacatcaaccattgttcaattataaataaaaagcagggaacaaaagcatattataaagctat |
449 |
Q |
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| T |
45333461 |
gtgttgtacagaacacctgatcatcactcaagtaaaatgacatcaaccatagttcaattgtaactaaacaacaggaaacaaaagcatattataaa-ttgt |
45333559 |
T |
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| Q |
450 |
ccaaagcaattcactcaaccacatacatccatctccaaaccaaattac |
497 |
Q |
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| T |
45333560 |
ccaaagcaattcagtcaaccacacacatccaactccaaaccaaattac |
45333607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 542 - 616
Target Start/End: Original strand, 45333640 - 45333714
Alignment:
| Q |
542 |
tcataggaaaatgttgcagagccagtatacccagtatccttctccttgaatttgtccgttagtccctgcaataca |
616 |
Q |
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| T |
45333640 |
tcataggagaatgttgcaaagccagtatacccagtatccttctccttgaatttgtctgttagtccctgcaataca |
45333714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 43322821 - 43322747
Alignment:
| Q |
255 |
caaaattgacatatgaaaagtagtagtgttctaacaatttgagataaaagcaattgcatcatataacaccaccaa |
329 |
Q |
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| T |
43322821 |
caaaatcgaaatatgaaaagtagtagcatttggacaatttgagattaaagcaattgactcatttaacaccaccaa |
43322747 |
T |
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