View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_12 (Length: 426)
Name: NF16809_low_12
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 32262360 - 32261943
Alignment:
| Q |
1 |
caaaacaggaaccattccaatacagaattccgttgacgacaacatatctccaaatagtcctaaaatttggacattctctatgaaatttcccatttcttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32262360 |
caaaacaggaaccattccaatacagaattccgttgacgacaacatatctccaaatagtcctaaaatttggacattctctatgaaatttcccatttcttca |
32262261 |
T |
|
| Q |
101 |
tctttcaaatttccaacattatgcctcttccctaccatcacaaggtcatagtctgcttccaaaccacgaattgcttccattatcttaactgcatcgtcca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32262260 |
tctttcaaatttccaacattatgcctcttccctaccatcacaaggtcatagtctgcttccaaaccacgaattgcttccattatctcaactgcatcgtcca |
32262161 |
T |
|
| Q |
201 |
ccacaatttcataccaaaaaatgttcccaatcccaaatttcatactcttaaactcatcgatcagaccttcatccaacatttcctcttgttcttcatctag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32262160 |
ccacaatttcataccaaaaaatgttcccaatcccaaatttcatactcttaaactcatcaatcagaccttcatccaacatttcctcttgttcttcatctag |
32262061 |
T |
|
| Q |
301 |
tggatctgttcgacttgaatcaattctagtcacatattttctgtttgtcacaatgaacctaaacaaagataccttcatattcagtctctccgacattcga |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32262060 |
tggatctgttcgacttgaatcaattctagtcacatattttctgtttgtcacaatgaacctaaacaaagataccttcatattcagtctctccgacattcga |
32261961 |
T |
|
| Q |
401 |
atccccaatgcctatgct |
418 |
Q |
| |
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|||||||||||| ||||| |
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| T |
32261960 |
atccccaatgccaatgct |
32261943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 32268633 - 32268572
Alignment:
| Q |
91 |
catttcttcatctttcaaatttccaacattatgcctcttccctaccatcacaaggtcatagt |
152 |
Q |
| |
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|||||||||||| |||||| ||||| |||||||||||| || ||||||||||| ||||||| |
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| T |
32268633 |
catttcttcatcagtcaaatctccaatattatgcctcttacccaccatcacaagatcatagt |
32268572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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