View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_13 (Length: 405)
Name: NF16809_low_13
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 7e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 30934515 - 30934301
Alignment:
| Q |
1 |
atatcggccacctcactgacacgttgacaccgataataatttagnnnnnnntatatgatttgattaaatgtaactgtttgtgttgtgttgtatcaatgtc |
100 |
Q |
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| T |
30934515 |
atatcggccacctcactgacacgttgacaccgataataatttagaaaaaa-tatatgatttgattaaatgtaactgtttgtgttgtgtcgtatcaatgtc |
30934417 |
T |
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| Q |
101 |
ggacaccagatacgttgtttggtttagtcatttgttttgtttagtttagtccttgatctgtaaagaaattccgtgaaatattcctttaataagttgattg |
200 |
Q |
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| T |
30934416 |
ggacaccagatacgttgtttggtttagtcctttgttttgtttagtttagtccttgatctgtaaagaaattccgtgaaatattcctttaataagttgattg |
30934317 |
T |
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| Q |
201 |
atttggaagagcatat |
216 |
Q |
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|||||| ||||||||| |
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| T |
30934316 |
atttgggagagcatat |
30934301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 219 - 390
Target Start/End: Complemental strand, 30934146 - 30933975
Alignment:
| Q |
219 |
ttgtaaaattccttgattttaactttctagtttctacaataattatgtgacatttttatgtaaattgaaaacgaccatacatgttaaaagaatatagctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30934146 |
ttgtaaaattccttgattttaactttctagtttctacaataattatgtgacatttttatgtaaattgaaaacgaccatacatgttaaaagaatatagctt |
30934047 |
T |
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| Q |
319 |
tgcttgtgaataatactatgtccaggctggctttccattagatgtagacaacccacccatgtgatccttatt |
390 |
Q |
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| T |
30934046 |
tgcttgtgaataatactatgtccaggctggctttccattagatgtagacaacccacccatgtgatccttatt |
30933975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 3150561 - 3150532
Alignment:
| Q |
14 |
cactgacacgttgacaccgataataattta |
43 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3150561 |
cactgacacgttgacaccgataataattta |
3150532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 1501002 - 1501053
Alignment:
| Q |
304 |
aaaagaatatagctttgcttgtgaataatactatgtccaggctggctttcca |
355 |
Q |
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||||||||||| | || ||||||||||||||||||||||||||||||||||| |
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| T |
1501002 |
aaaagaatataacctttcttgtgaataatactatgtccaggctggctttcca |
1501053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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