View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16809_low_16 (Length: 380)

Name: NF16809_low_16
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16809_low_16
NF16809_low_16
[»] chr2 (1 HSPs)
chr2 (10-300)||(18629893-18630185)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 18630185 - 18629893
Alignment:
Q  10 atgaacatatagctagtgtgaaggtcttatttctcttgagtt-gtggatc-tttgaatatcaaaatcaagtttgctaccctatcacctatgattgatgat 107  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18630185 atgaacatatagctagtgtgaaggtcttatttctcttgattttgtggatcctttgaatatcaaaatcaagtttgctaccctatcacctatgattgatgat 18630086  T
Q  108 accaaaaatagaaaacccccataaatgcatgtgacttggtcaacacaacaaatcccttaaacctatatcaactccaaaattatctaaccaacttcaacta 207  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18630085 accaaaaatagaacacccccacaaatacatgtgacttggtcaacacaacaaatcccttaaacctatatcaactccaaaattatctaaccaacttcaacta 18629986  T
Q  208 tttccatgcaaactctattcttagaatccaacaccaatttgtggcaaaacaacatcatcaccaatcttctctctctccacattaccaacatcc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18629985 tttccatgcaaactctattcttagaatccaacaccaatttgtggcaaaacaacatcatcaccaatcttctctctctccacattaccaacatcc 18629893  T

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