View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_18 (Length: 356)
Name: NF16809_low_18
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 48669488 - 48669795
Alignment:
| Q |
7 |
tgaaaagaaaagaaagagaggtttatgttacgtgtgtgatggaacagaactgaatagtatgattcttcaggtggcaagcaaggtaacgaaccaattaata |
106 |
Q |
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| T |
48669488 |
tgaaaagaaaagaaagagaggtttacgttacgtgtgtgatggaacagaacagaatagtatgattcttcaggtggcaagcaaggtaacgaaccaattaata |
48669587 |
T |
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| Q |
107 |
tactctttcctctcactttcttcactctatact-ccatttgcttttcgatttccaacacaaataaaacaaata-tttccaattgtaggttcgccttaggc |
204 |
Q |
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| T |
48669588 |
tactctttcctctcactttcttcactctatactcccatttgcttttcgatttccaacacaaataaaacaaatattttcaaattgtaggttcgccttaggc |
48669687 |
T |
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| Q |
205 |
caccaaaatctcataaac-gtcatgcgtccaaaaagatttaaactccatccaccttttacctttgaacaaaaagatccattattttagtccatccttata |
303 |
Q |
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| T |
48669688 |
caccaaaatcttataaacggccctgcgtccaaaaagatttaaactccatccaccttttacctttgaacaaaaagttccattcttttagtccatcattatt |
48669787 |
T |
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| Q |
304 |
aaatctat |
311 |
Q |
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| T |
48669788 |
aaatctat |
48669795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 46786728 - 46786689
Alignment:
| Q |
184 |
aattgtaggttcgccttaggccaccaaaatctcataaacg |
223 |
Q |
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| T |
46786728 |
aattgtaggttcgccctaggccaccaaaatctcagaaacg |
46786689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 34454164 - 34454203
Alignment:
| Q |
184 |
aattgtaggttcgccttaggccaccaaaatctcataaacg |
223 |
Q |
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| T |
34454164 |
aattgtaggttcgccctaggccaccaaaatctcagaaacg |
34454203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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