View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_2 (Length: 601)
Name: NF16809_low_2
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 517
Target Start/End: Complemental strand, 3810099 - 3809590
Alignment:
| Q |
13 |
attatactgaataagttgttgttggactaccaattgataaattattctatatttggcttaatggtttcaattgatcaatgaaatgaacaattttcttctt |
112 |
Q |
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| T |
3810099 |
attatactgaataagctgttgttggactaccaattgataaattattctatatttggcttaatggattcaattgattaatgaaatgaactattttcttctt |
3810000 |
T |
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| Q |
113 |
ctcatgtacgtgttgttacccataattcatttctagcaatagtgttaccgcaatttagaaatggaacaatatattaaagatgttagagtgcagattatga |
212 |
Q |
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| T |
3809999 |
ctcatttacgtgttgttacccataattcatttctagcaatagtgttaccgcaatttagaaatagaacgatatattaaagatgttagagtgcagattatga |
3809900 |
T |
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| Q |
213 |
cactaaacaagctgttacagtgcttccaatttcctccaaacttaattgcttagttttttgcattctttgtggatgatgtcattaaatagttcacgataag |
312 |
Q |
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| T |
3809899 |
cactaaataagctgttacactgcttccaatttcctccaaacttaattgctcagttttttgcattctttgtggatgatatcattaaatagttcaggataag |
3809800 |
T |
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| Q |
313 |
tgaatccctacacaacaaacaaacacacttaagcctctataataaaatatgtaaacacatcaattat-----nnnnnnncatatgtaaacttaaacttag |
407 |
Q |
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| T |
3809799 |
tgaatccctacacaacaaacaaacacacgtaagcctctataataaaatatgtaaacacatcaattataaaaaaaatatatatatgtaaacttaaacttag |
3809700 |
T |
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| Q |
408 |
cttgaagacataccatataatctgaacccttttgtgatgggagccgtattctatcttgagcttcaatagcagcatatagacatgatcttcttctacatga |
507 |
Q |
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| T |
3809699 |
cttgaagacataccatgtaatctgaacccttttgtgatgggagccgtattctatcttgagcttcaatagcagcatatagacatgatcttcttctacatga |
3809600 |
T |
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| Q |
508 |
taatcccata |
517 |
Q |
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| T |
3809599 |
taatcgcata |
3809590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 511 - 601
Target Start/End: Complemental strand, 3809034 - 3808944
Alignment:
| Q |
511 |
tcccatagtgcacccgtgacataaatattaagaagaaacacattaatataggtgtacagatgagaatcaacacagagaaagaaagaaaagt |
601 |
Q |
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| T |
3809034 |
tcccgtagtgcatctgtgacataaatattaagaagaaacacatcaatataggtgtacagatgagaatcaacacagagaaagaaagaaaagt |
3808944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 3810244 - 3810095
Alignment:
| Q |
59 |
ctatatttggcttaatggtttcaattgatcaatgaaatgaacaattttcttcttctcatgtacgtgttgttacccataattcatttctagcaatagtgtt |
158 |
Q |
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| T |
3810244 |
ctatatttggcttaatggtgtcaattgataaatgaaataaactattttcttctctt--tttacgtgttgttacccataattgatttttaacaatagttgt |
3810147 |
T |
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| Q |
159 |
accgcaatttagaaatggaacaatatattaaagatgttagagtgcagattat |
210 |
Q |
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||||||| |||||||||||||||||| | |||| ||||| |||||| ||||| |
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| T |
3810146 |
accgcaacttagaaatggaacaatatctaaaagttgttacagtgcaaattat |
3810095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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