View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16809_low_20 (Length: 354)
Name: NF16809_low_20
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 5 - 343
Target Start/End: Original strand, 11119355 - 11119693
Alignment:
| Q |
5 |
catcatcaacaacaataacaccatcaacatcatcttcattagcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacct |
104 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119355 |
catcaacaacaataataacaccatcaacatcatcttcattctcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacct |
11119454 |
T |
|
| Q |
105 |
atcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11119455 |
atcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcgttgtct |
11119554 |
T |
|
| Q |
205 |
gcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcacct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
11119555 |
gcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccatttcctaaattcacct |
11119654 |
T |
|
| Q |
305 |
taggttcaacatacaattcaacatcacacttcttctcac |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11119655 |
taggttcaacatacaattcaacatcacacttcttatcac |
11119693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 111 - 316
Target Start/End: Original strand, 12205970 - 12206175
Alignment:
| Q |
111 |
aaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttca |
210 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
|
| Q |
211 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggtt |
310 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttaggtt |
12206169 |
T |
|
| Q |
311 |
caacat |
316 |
Q |
| |
|
|||||| |
|
|
| T |
12206170 |
caacat |
12206175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 32 - 335
Target Start/End: Original strand, 32741098 - 32741389
Alignment:
| Q |
32 |
catcatcttcattagcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacctatcatcaaccccagccatcctctcttc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||| |
|
|
| T |
32741098 |
catcatcttcattagcattgttagggtcaagttggggttctgaaatgacattat------------caaacccatcatcaaccgcagccatcttctcttc |
32741185 |
T |
|
| Q |
132 |
ttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttcaccaacattgccttcaacttca |
231 |
Q |
| |
|
|||||| |||| |||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||| |||| |
|
|
| T |
32741186 |
ttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatctccaccatcgatgtctacttcaccaacatcgccttcaatttca |
32741285 |
T |
|
| Q |
232 |
tccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggttcaacatacaattcaacatcac |
331 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32741286 |
tccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcatttcctaaattcaccttaggttcaacatacaattcaacatcgc |
32741385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University