View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_22 (Length: 331)
Name: NF16809_low_22
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 30426286 - 30426584
Alignment:
| Q |
18 |
ttgccttcatgtttgccccagttgttgcagcatggcttttgtgcatcagtggtattggtatatacaatatattccgatggaaccgacaagtatatcgtgc |
117 |
Q |
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| T |
30426286 |
ttgccttcatgtttgccccagttgttgcagcatggcttttgtgcatcagtggtattggtatatacaatatattccgatggaaccgacaagtatatcgtgc |
30426385 |
T |
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| Q |
118 |
actttctccattctatatgttcaggtttctcaaaacaactggcattgaaggatggttgtcattaagtggagtggtgctttcgataacaggtaactataag |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30426386 |
actttctccagtctatatgttcaggtttctcaaaacaactggcattgaaggatggttgtcattaagtggagtggtgctttagataacaggtaactataag |
30426485 |
T |
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| Q |
218 |
ttagtcaattttattatagttgtctagcttgtgttatttgaacaaccaaattcagacaattttcgcaataactttttaagtggttaacacagttcatgt |
316 |
Q |
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| T |
30426486 |
ttagtcaattttattatagttgtctagcttgtgttatttgaacaaccaaattcagacaattttcgcaataactttttaagtggttaacacagttcatgt |
30426584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 30526495 - 30526201
Alignment:
| Q |
18 |
ttgccttcatgtttgccccagttgttgcagcatggcttttgtgcatcagtggtattggtatatacaatatattccgatggaaccgacaagtatatcgtgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
30526495 |
ttgccttcatgtttgccccagttgttgcagcatggcttttgtgtatcagtggtattggtatatacaatattttccaatggaaccgacaagtatatcgtgc |
30526396 |
T |
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| Q |
118 |
actttctccattctatatgttcaggtttctcaaaacaactggcattgaaggatggttgtcattaagtggagtggtgctttcgataacaggtaactataag |
217 |
Q |
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| T |
30526395 |
actttctccagtctatatgtttaggtttctcaaaaccactggcatcgaaggatggttgtcattaagtggagttgtgctttcgataacaggtaa-tataag |
30526297 |
T |
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| Q |
218 |
ttagtcaattttattatagttgtctagcttgtgttatttgaacaaccaaattcagacaattttcgcaataactttttaagtggttaacacagttca |
313 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
30526296 |
ttagtcaattttattacagttgtctagcttgtgttatttgaacaaccaaattcagacaattttcgcaacaactttttaagtggttaacacacttca |
30526201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 30566835 - 30566541
Alignment:
| Q |
18 |
ttgccttcatgtttgccccagttgttgcagcatggcttttgtgcatcagtggtattggtatatacaatatattccgatggaaccgacaagtatatcgtgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
30566835 |
ttgccttcatgtttgccccagttgttgcagcatggcttttgtgtatcagtggtattggtatatacaatattttccaatggaaccgacaagtatatcgtgc |
30566736 |
T |
|
| Q |
118 |
actttctccattctatatgttcaggtttctcaaaacaactggcattgaaggatggttgtcattaagtggagtggtgctttcgataacaggtaactataag |
217 |
Q |
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|||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
30566735 |
actttctccagtctatatgtttaggtttctcaaaaccactggcatcgaaggatggttgtcattaagtggagttgtgctttcgataacaggtaa-tataag |
30566637 |
T |
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| Q |
218 |
ttagtcaattttattatagttgtctagcttgtgttatttgaacaaccaaattcagacaattttcgcaataactttttaagtggttaacacagttca |
313 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
30566636 |
ttagtcaattttattacagttgtctagcttgtgttatttgaacaaccaaattcagacaattttcgcaacaactttttaagtggttaacacacttca |
30566541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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