View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_23 (Length: 327)
Name: NF16809_low_23
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_23 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 327
Target Start/End: Complemental strand, 8187956 - 8187643
Alignment:
| Q |
15 |
gaagtcgtaaatttcaacaatcaagttaatgaaacatattatggaaacctccaaaatgagtttatgaatggcaacaaaa-tagcataaatgagagactct |
113 |
Q |
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| T |
8187956 |
gaagtcgtaaatttcaataatcaagttaatggaacatattatggaatcctccaaaatgaatttatgaatggcaacaaaagtagcataaatgagagactct |
8187857 |
T |
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| Q |
114 |
aataatcaagaatcaagtcaccaaaagcagaatcaacaagaaacaaaaaatattaatcaaaaacaccacctcttgttctcttaaaatcacatgcatatcc |
213 |
Q |
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| T |
8187856 |
aataatcaagaatcaagtcaccaaaagcagaatcaacaagaaacaaaaaatattaatcaaaaacaccacctcttgttctcttaaaatcacatgcatatcc |
8187757 |
T |
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| Q |
214 |
acactaaagttagtaggacatataaaactcaccatatcagaaattaggcaaataaaccactaagtggaatatataatttacatgttatattatgacaggg |
313 |
Q |
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| T |
8187756 |
acactaaagttagtaggacatataaaactcaccatatcagaaattaggcaaataaaccactaagtggaatatatgatttacatgttatattatgacaggg |
8187657 |
T |
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| Q |
314 |
ctaaagaagaaaca |
327 |
Q |
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| T |
8187656 |
ctaaagaagaaaca |
8187643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 8184557 - 8184502
Alignment:
| Q |
94 |
tagcataaatgagagactctaataatcaagaatcaagtcaccaaaagcagaatcaa |
149 |
Q |
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| T |
8184557 |
tagcataaatgagagactctcataatcaagaatcaagtcaccaaaagtagaatcaa |
8184502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 516844 - 516762
Alignment:
| Q |
90 |
aaaatagcataaatgagagactctaataatcaagaatcaagtcaccaaaagcagaatcaacaagaaacaaaaaatattaatca |
172 |
Q |
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| T |
516844 |
aaaatagcataaatgagagacctcaacaatccagaatcaagttgccccaagcagaatcaacaagcaacaacaaagattaatca |
516762 |
T |
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