View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16809_low_25 (Length: 303)

Name: NF16809_low_25
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16809_low_25
NF16809_low_25
[»] chr6 (5 HSPs)
chr6 (107-280)||(9051338-9051513)
chr6 (14-64)||(9051528-9051578)
chr6 (226-277)||(34524869-34524920)
chr6 (226-264)||(11520711-11520749)
chr6 (226-282)||(22730747-22730803)
[»] chr5 (2 HSPs)
chr5 (226-277)||(25660906-25660957)
chr5 (225-277)||(38040259-38040311)
[»] chr4 (4 HSPs)
chr4 (226-281)||(49039491-49039546)
chr4 (226-282)||(38657534-38657590)
chr4 (226-288)||(36045824-36045886)
chr4 (224-277)||(20166308-20166361)
[»] chr1 (8 HSPs)
chr1 (226-277)||(52961132-52961183)
chr1 (230-280)||(49632291-49632341)
chr1 (229-288)||(7015726-7015785)
chr1 (226-277)||(9768859-9768910)
chr1 (226-277)||(18003810-18003861)
chr1 (226-279)||(18179322-18179375)
chr1 (228-277)||(19536713-19536762)
chr1 (225-273)||(48260243-48260291)
[»] scaffold0168 (1 HSPs)
scaffold0168 (226-277)||(34083-34134)
[»] chr3 (3 HSPs)
chr3 (226-277)||(16874240-16874291)
chr3 (226-272)||(40160729-40160775)
chr3 (227-271)||(42935415-42935459)
[»] chr2 (5 HSPs)
chr2 (226-277)||(5772854-5772905)
chr2 (226-265)||(22355077-22355116)
chr2 (226-277)||(36277752-36277803)
chr2 (226-260)||(30736969-30737003)
chr2 (226-277)||(29664596-29664648)
[»] chr8 (1 HSPs)
chr8 (226-272)||(41793028-41793073)
[»] chr7 (3 HSPs)
chr7 (226-272)||(7392361-7392407)
chr7 (230-272)||(8147241-8147283)
chr7 (232-277)||(41012631-41012676)
[»] scaffold0054 (1 HSPs)
scaffold0054 (233-277)||(67162-67206)
[»] scaffold0002 (1 HSPs)
scaffold0002 (226-277)||(451425-451477)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 107 - 280
Target Start/End: Complemental strand, 9051513 - 9051338
Alignment:
Q  107 gtcccggttcacaccaaaacaacgtgctcacaatcatatctcgtaatannnnnnnnnaaa--tgttttaataattaacataataaaatggtattacggta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         |||  ||||||||||||||||||||||||||||||||| ||||    
T  9051513 gtcccggttcacaccaaaacaacgtgctcacaatcatatctcgtaatattttaaaaaaaaaatgttttaataattaacataataaaatggtattatggta 9051414  T
Q  205 tagttaaaattgatgcatgtggtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtagggact 280  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9051413 tagttaaaattgatgcatgtggtctccgtgagcatagctcaattggcaaggatatgcattgttatatgtagggact 9051338  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 9051578 - 9051528
Alignment:
Q  14 catctccttcatttccctcataaatcttcaatccaaacgcaccctaagata 64  Q
    |||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  9051578 catctcctccatttccctcctaaatcctcaatccaaacgcaccctaagata 9051528  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 34524869 - 34524920
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    |||||||||||||||||||| |||||| ||| |||||||| |||||| ||||    
T  34524869 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggg 34524920  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 11520711 - 11520749
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcatt 264  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  11520711 gtccccgtgagcatatctcaattggcagggatatgcatt 11520749  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 22730803 - 22730747
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtagggactga 282  Q
    ||||||||||||||| |||| ||||||  || |||||||| |||||| |||||||||    
T  22730803 gtccccgtgagcataactcagttggcagagacatgcattgttatatgcagggactga 22730747  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 25660906 - 25660957
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    |||||||||||||||||||| |||||| |||||||||||| |||||| ||||    
T  25660906 gtccccgtgagcatagctcagttggcagggatatgcattgttatatgcaggg 25660957  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 38040259 - 38040311
Alignment:
Q  225 ggtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    ||||||| ||||||||||||| |||||| ||| |||||||| |||||| ||||    
T  38040259 ggtccccatgagcatagctcagttggcagggacatgcattgttatatgcaggg 38040311  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 281
Target Start/End: Complemental strand, 49039546 - 49039491
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtagggactg 281  Q
    |||||||||||||||||||| |||||| ||| |||||||| |||||| ||||||||    
T  49039546 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcagggactg 49039491  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 38657534 - 38657590
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtagggactga 282  Q
    |||||||||||||| ||||| |||||| ||| |||||||| |||||| |||||||||    
T  38657534 gtccccgtgagcatggctcagttggcagggacatgcattgttatatgcagggactga 38657590  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 36045824 - 36045886
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtagggactgagattcg 288  Q
    ||||| |||||||||||||||||| || ||| |||||||| |||||| ||||  |||||||||    
T  36045824 gtcccagtgagcatagctcaattgacagggacatgcattgttatatgcaggggttgagattcg 36045886  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 20166308 - 20166361
Alignment:
Q  224 tggtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    |||||||||||||| ||||||| |||||| ||| |||||||| |||||| ||||    
T  20166308 tggtccccgtgagcgtagctcagttggcagggacatgcattgttatatgcaggg 20166361  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 52961183 - 52961132
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||| ||||    
T  52961183 gtccccgtgagcatagctcagttggcaaggacatgcattgttatatgcaggg 52961132  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 49632291 - 49632341
Alignment:
Q  230 ccgtgagcatagctcaattggcaaggatatgcattgctatatgtagggact 280  Q
    |||||||| |||||||||||||| ||| |||||||| ||||||||||||||    
T  49632291 ccgtgagcgtagctcaattggcagggacatgcattgttatatgtagggact 49632341  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 7015785 - 7015726
Alignment:
Q  229 cccgtgagcatagctcaattggcaaggatatgcattgctatatgtagggactgagattcg 288  Q
    ||||||||||||||||| |||||  ||| |||||||| ||||||||||| ||||| ||||    
T  7015785 cccgtgagcatagctcagttggctgggacatgcattgttatatgtaggggctgaggttcg 7015726  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 9768910 - 9768859
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    |||||||||||||||||||| |||||| ||| |||||||| |||||| ||||    
T  9768910 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggg 9768859  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 18003810 - 18003861
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    |||||||||||||||||||| |||||| ||| |||||||| |||||| ||||    
T  18003810 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggg 18003861  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 18179322 - 18179375
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtagggac 279  Q
    ||||||||||||||| |||| |||||| ||| |||||||| |||||| ||||||    
T  18179322 gtccccgtgagcataactcagttggcagggacatgcattgttatatgcagggac 18179375  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 19536713 - 19536762
Alignment:
Q  228 ccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    |||||| ||||||||||| |||| | ||| ||||||||||||||||||||    
T  19536713 ccccgtaagcatagctcagttggtagggacatgcattgctatatgtaggg 19536762  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 48260291 - 48260243
Alignment:
Q  225 ggtccccgtgagcatagctcaattggcaaggatatgcattgctatatgt 273  Q
    ||||||||||||||||||||| |||||| |||| ||||||  |||||||    
T  48260291 ggtccccgtgagcatagctcagttggcagggatgtgcattattatatgt 48260243  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 34134 - 34083
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    |||||||||||||||||||| |||||| ||| |||||||| |||||| ||||    
T  34134 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggg 34083  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 16874291 - 16874240
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    |||||||||||||||||||| |||||| ||| |||||||| |||||| ||||    
T  16874291 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggg 16874240  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 40160729 - 40160775
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatg 272  Q
    |||| |||||||||||||||||||||| ||| |||||||| ||||||    
T  40160729 gtcctcgtgagcatagctcaattggcagggacatgcattgttatatg 40160775  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 42935415 - 42935459
Alignment:
Q  227 tccccgtgagcatagctcaattggcaaggatatgcattgctatat 271  Q
    ||||||||||||||||||| |||| ||||||||| |||| |||||    
T  42935415 tccccgtgagcatagctcagttggtaaggatatgtattgttatat 42935459  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 5772854 - 5772905
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    |||||||||||||||||||| |||||||||| ||| |||| |||||| ||||    
T  5772854 gtccccgtgagcatagctcagttggcaaggacatgtattgttatatgcaggg 5772905  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 22355077 - 22355116
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattg 265  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  22355077 gtccccgtgagcatagctcagttggcaaggacatgcattg 22355116  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 36277803 - 36277752
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    |||||||||||||||||||| ||||||  || |||||||| |||||||||||    
T  36277803 gtccccgtgagcatagctcagttggcagtgacatgcattgttatatgtaggg 36277752  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 30736969 - 30737003
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatg 260  Q
    ||||||||||||||||||||||||||| |||||||    
T  30736969 gtccccgtgagcatagctcaattggcagggatatg 30737003  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 29664596 - 29664648
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaagga-tatgcattgctatatgtaggg 277  Q
    ||||||||||||||||||||||||||| |||  |||||||| |||||| ||||    
T  29664596 gtccccgtgagcatagctcaattggcagggacaatgcattgttatatgcaggg 29664648  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 41793073 - 41793028
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatg 272  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||    
T  41793073 gtccccgtgagcatagctcaattggc-aggacatgcattgttatatg 41793028  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 7392407 - 7392361
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaaggatatgcattgctatatg 272  Q
    ||||||||||||||||||||||||||| | | |||||||| ||||||    
T  7392407 gtccccgtgagcatagctcaattggcaggaacatgcattgttatatg 7392361  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 8147283 - 8147241
Alignment:
Q  230 ccgtgagcatagctcaattggcaaggatatgcattgctatatg 272  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||    
T  8147283 ccgtgagcatagctcaattggcagggacatgcattgttatatg 8147241  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 41012676 - 41012631
Alignment:
Q  232 gtgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    ||||||||||||||||||| | ||| |||||||| |||||||||||    
T  41012676 gtgagcatagctcaattggtagggacatgcattgttatatgtaggg 41012631  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 67162 - 67206
Alignment:
Q  233 tgagcatagctcaattggcaaggatatgcattgctatatgtaggg 277  Q
    ||||||||||||| |||| | |||||||||||| |||||||||||    
T  67162 tgagcatagctcagttgggagggatatgcattgttatatgtaggg 67206  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 451477 - 451425
Alignment:
Q  226 gtccccgtgagcatagctcaattggcaagga-tatgcattgctatatgtaggg 277  Q
    |||||||||||||||||||| || |||||||  |||||||| |||||||||||    
T  451477 gtccccgtgagcatagctcagttagcaaggacaatgcattgttatatgtaggg 451425  T

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