View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16809_low_26 (Length: 297)
Name: NF16809_low_26
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_26 |
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| [»] scaffold0754 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 18445710 - 18445992
Alignment:
| Q |
1 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttcgggatttatcggataaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18445710 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttggggatttatcggataaatt |
18445809 |
T |
|
| Q |
101 |
tagcttatgctttgaattgagtttttcgttgagaatgatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
18445810 |
tagcttatgctttgaattgagtttttcgttgagaaggatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactga |
18445909 |
T |
|
| Q |
201 |
attcacacaactccgatatccaagttattctttttctgtgtttgatatgcaactcgaaagagtcgttaatctttattgttgat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18445910 |
attcacacaactccgatatccaagttattctttttgtgtgtttgatatgcaactcgaaagagtcgttaatctttattgttgat |
18445992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 18439941 - 18440222
Alignment:
| Q |
1 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttcgggatttatcggataaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
18439941 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttggggatttatcggataaatt |
18440040 |
T |
|
| Q |
101 |
tagcttatgctttgaattgagtttttcgttgagaatgatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
18440041 |
tagcttatgctttgaattgagtttttcgttgagaaggatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactga |
18440140 |
T |
|
| Q |
201 |
attcacacaactccgatatccaagttattctttttctgtgtttgatatgcaactcgaaagagtcgttaatctttattgttga |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18440141 |
attcacacaactccgatatccaagttattctttttgtgtgtttgatatgcaactcgaaagagtcgttaatctttattgttga |
18440222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 18442824 - 18443106
Alignment:
| Q |
1 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttcgggatttatcggataaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
18442824 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttggggatttatcggataaatt |
18442923 |
T |
|
| Q |
101 |
tagcttatgctttgaattgagtttttcgttgagaatgatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
18442924 |
tagcttatgctttgaattgagtttttcgctgagaaggatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactga |
18443023 |
T |
|
| Q |
201 |
attcacacaactccgatatccaagttattctttttctgtgtttgatatgcaactcgaaagagtcgttaatctttattgttgat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18443024 |
attcacacaactccgatatccaagttattctttttgtgtgtttgatatgcaactcgaaagagtcgttaatctttattgttgat |
18443106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 18450799 - 18451081
Alignment:
| Q |
1 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttcgggatttatcggataaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
18450799 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttggggatttatcggataaatt |
18450898 |
T |
|
| Q |
101 |
tagcttatgctttgaattgagtttttcgttgagaatgatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18450899 |
tagcttatgctttgaattgagtttttcgctgagaaggatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactga |
18450998 |
T |
|
| Q |
201 |
attcacacaactccgatatccaagttattctttttctgtgtttgatatgcaactcgaaagagtcgttaatctttattgttgat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18450999 |
attcacacaactccgatatccaagttattctttttgtgtgtttgatatgcaactcgaaagagtcgttaatctttattgttgat |
18451081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 18456039 - 18456321
Alignment:
| Q |
1 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttcgggatttatcggataaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18456039 |
ctgcaattgtaaagaaagtgaaagttaagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttggggatttatcggataaatt |
18456138 |
T |
|
| Q |
101 |
tagcttatgctttgaattgagtttttcgttgagaatgatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18456139 |
tagcttatgctttgaattgagtttttcgatgagaaggatatatgaagagggaaagttattccattctccagtttcatatgtctctttagttagagactga |
18456238 |
T |
|
| Q |
201 |
attcacacaactccgatatccaagttattctttttctgtgtttgatatgcaactcgaaagagtcgttaatctttattgttgat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
18456239 |
attcacacaactccgatatccaagttattctttttgtgtgtttgatatgcatctcgaaagagtctttaatctttgttgttgat |
18456321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0754 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: scaffold0754
Description:
Target: scaffold0754; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 540 - 822
Alignment:
| Q |
1 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttcgggatttatcggataaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
540 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttggggatttatcggataaatt |
639 |
T |
|
| Q |
101 |
tagcttatgctttgaattgagtttttcgttgagaatgatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
640 |
tagcttatgctttgaattgagtttttcgctgagaaggatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactga |
739 |
T |
|
| Q |
201 |
attcacacaactccgatatccaagttattctttttctgtgtttgatatgcaactcgaaagagtcgttaatctttattgttgat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
740 |
attcacacaactccgatatccaagttattctttttgtgtgtttgatatgcaactcgaaagagtcgttaatctttattgttgat |
822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 43240878 - 43240616
Alignment:
| Q |
1 |
ctgcaattgtaaagaaagtgaaagttgagaatgtagaaccaagattaaatactgacctaggaatcagataggttacgtttcgggatttatcggataaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |
|
|
| T |
43240878 |
ctgcaattgtaaagaaagtgaaagttgaaaatgtagaaccaggattaaatactgacctaggaatcggataggttacgtttggggatttatcggagaaatt |
43240779 |
T |
|
| Q |
101 |
tagcttatgctttgaattgagtttttcgttgagaatgatatatgaagagggaaagtttttccattctccagtttcatatgtctctttagttagagactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| ||||||||||||| | |
|
|
| T |
43240778 |
tagcttatgctttgaattgagtttttcgaag--------------agagggaaagtttttccattctccactttcatatgtct-tttagttagagac-ga |
43240695 |
T |
|
| Q |
201 |
attcacacaactccgatatccaagttattctttttctgtgtttgatatgcaactcgaaagagtcgttaatctttattgttgat |
283 |
Q |
| |
|
||||||| | |||| |||||| |||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
43240694 |
attcacagagctccaatatcctagttattctttt----tgtttgacacgcaactcgaaagagtcgttaatctttgttgttgat |
43240616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 43240466 - 43240414
Alignment:
| Q |
146 |
agagggaaagtttttccattctccagtttcatatgtctctttagttagagact |
198 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43240466 |
agagagaaagtttttccattctccagtttcatatgtctatttagttagagact |
43240414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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