View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_3 (Length: 597)
Name: NF16809_low_3
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_3 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 243 - 580
Target Start/End: Complemental strand, 42468438 - 42468108
Alignment:
| Q |
243 |
atgtatcctgtgactcaaactcttgacaattggaaatctcttcggggaataatacctgaacagaattaaccgtgactggtatgactgtctaatcgtcata |
342 |
Q |
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| T |
42468438 |
atgtatcttgtgactcgaactcttgacaattggaaatctctttggggaataatacctgaacagaattaaccgtgactggtatgactgtgtaatcgtcata |
42468339 |
T |
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| Q |
343 |
atgctgccagtactgtgatactt-aagaataaaaattgatgtaataaaagtgtgactctttgttgttttccacatatctagtaattgttggcttctgttg |
441 |
Q |
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| T |
42468338 |
atgctgccagtactgtgatacttaaagaataaaaattgatgtaataaaagtgtgactccttgttgttttccaca-------taattgttggcttctgttg |
42468246 |
T |
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| Q |
442 |
ttaattacgtaagctagctacatattgatccgcatcacgcaggatgaaaataatataagcttcgttatgtatttcatccctacaaatatattgttactag |
541 |
Q |
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||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
42468245 |
ttaattatgtaagctagctacatattgacctgcatcacgcaggatgaaaataatataagcttcattatgtatttcatccctacaaatatattg-tactag |
42468147 |
T |
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| Q |
542 |
tcaatatgtcttttccattaataatgagtgtatacttat |
580 |
Q |
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| T |
42468146 |
tcaatatgtcttttccattaataatgagtgtatgcttat |
42468108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 42471360 - 42471130
Alignment:
| Q |
11 |
cacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcgatggg |
110 |
Q |
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| T |
42471360 |
cacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacatcagcgatggg |
42471261 |
T |
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| Q |
111 |
tttacttgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctcacaaaatcaacgaagcatactttttcaaagatgaatacaaca |
210 |
Q |
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| T |
42471260 |
tttacttgtttccatggcactgtctttgaaaatggattggatgcagctttttcctctcacaagatcaatgaagcatac-------aagatgaatacaaca |
42471168 |
T |
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| Q |
211 |
catgtgtcctatttgttccaggctcaacagacatgtat |
248 |
Q |
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| T |
42471167 |
catgtgtcctatttgttccaggctcaacagacatgtat |
42471130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 3352427 - 3352608
Alignment:
| Q |
17 |
caaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcgatgggtttact |
116 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||| ||||||| |
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| T |
3352427 |
caaataagtttacttattcaaaggagacaagtatgctcgtatagattatggaaccaaccgtctggttcaaagtatcaagaacattatcgacgggtttatg |
3352526 |
T |
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| Q |
117 |
tgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctcacaaaatcaacgaagcatactttttcaaag |
198 |
Q |
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| T |
3352527 |
tgtttccgtggcacaatctttgaaaatggaattgatgcagcttttgcttctcataagactaatgaagcctactttttcaaag |
3352608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 42046167 - 42046115
Alignment:
| Q |
17 |
caaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaa |
69 |
Q |
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| T |
42046167 |
caaagaagcttacttatttaaaggagaccaatatgctcgtatagactatggaa |
42046115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 63358 - 63205
Alignment:
| Q |
16 |
acaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcgatgggtttac |
115 |
Q |
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||||||| | |||||| |||| |||||||||||||||||||||||| ||||| || || ||||| ||||||| |||| | |||| | | |||||||| |
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| T |
63358 |
acaaagaggtttacttgttcagaggagacaagtatgctcgtatagactatggcacgaacagtcttgttcaaattatcagggacatcaacagcgggtttac |
63259 |
T |
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| Q |
116 |
ttgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctca |
169 |
Q |
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| T |
63258 |
ttgtttccgagacacgatctttgaaaagggaatcgatgcggcttttgcttctca |
63205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 37302 - 37149
Alignment:
| Q |
16 |
acaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcgatgggtttac |
115 |
Q |
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| T |
37302 |
acaaagaggtttacttgttcagaggagataagtatgctcgtatagactatggcacgaacagtcttgttcaaattatcagggacatcaacagcgggtttac |
37203 |
T |
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| Q |
116 |
ttgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctca |
169 |
Q |
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| T |
37202 |
ttgtttccgagacacgatctttgaaaagggaatcgatgcggcttttgcttctca |
37149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 14452708 - 14452764
Alignment:
| Q |
17 |
caaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaa |
73 |
Q |
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| T |
14452708 |
caaagaagttcacttattcaaaggagacaagtatgctcgtatagactatggcaccaa |
14452764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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