View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_31 (Length: 278)
Name: NF16809_low_31
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 12154836 - 12154592
Alignment:
| Q |
17 |
atgtacttcaagtgatcatcagcgagcctttgtagttcttcggcttggttaaaattattgagggtggactcaataataggaatatcagaacgcagattgt |
116 |
Q |
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| T |
12154836 |
atgtacttcaagtgatcatcagcgagcctttgtagttcttcggcttggttaaaattattgagggtcgactcaataataggaatatcagaacgcagattgt |
12154737 |
T |
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| Q |
117 |
tcaacaagatctgaagagagaccataacacctctttcaaaactatcaagattgggttttaagttttccatctcgtctaaaatattttggagattattcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12154736 |
tcaacaagatctgaagagagaccataacacctctttcagaactatcaagattgggttttaagttttccatctcgtctaaaatattttggagattattcac |
12154637 |
T |
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| Q |
217 |
caggttggaattagaaatggatgaggtaaagtcacaacctataat |
261 |
Q |
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| T |
12154636 |
caggttggaattagaaatggatgaggtaaagtcacaacctataat |
12154592 |
T |
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