View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_33 (Length: 269)
Name: NF16809_low_33
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 4173835 - 4173596
Alignment:
| Q |
10 |
agatgaaaatcaaggttgacacaatgaaagacattgttgtgatgtcaagagttaaggaatttcactattttccctaccgtatgtacacttgaatatataa |
109 |
Q |
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| T |
4173835 |
agatgaaaatcaaggttgacacaatgaaagacattgttgtgatgtcaagagttaaggaatttcactattttccctaccgtatgtacacttgaatatataa |
4173736 |
T |
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| Q |
110 |
actattttcatcaaataagttaaatttgtgagctatggctttgggagccaacattgcaatgcacatgatccattaaattactcaatctgcaggggaagta |
209 |
Q |
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| T |
4173735 |
actattttcatcaaataagttaaatttgtga---atggctttgggagccaacattgcaatgcacatgatccattaaattactcaatctgcaggggaagta |
4173639 |
T |
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| Q |
210 |
tttacaaggnnnnnnntaatttgcattacgtacaaacaaataaa |
253 |
Q |
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| T |
4173638 |
tttacaagg-aaaaaataatttgcattacgtacaaacaaataaa |
4173596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 4179134 - 4179070
Alignment:
| Q |
149 |
tttgggagccaacattgcaatgcacatgatccattaaattactcaatctgcaggggaagtattta |
213 |
Q |
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| T |
4179134 |
tttgggagccaacattgcaatgcacatgatccattaagttaatcaatctgcaggggaagtattta |
4179070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 4170121 - 4170058
Alignment:
| Q |
10 |
agatgaaaatcaaggttgacacaatgaaagacattgttgtgatgtcaagagttaaggaatttca |
73 |
Q |
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| T |
4170121 |
agatgaaaatcaaggctgacacaatgaaagacattgttgtgatgtcaagagttagggaatttca |
4170058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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