View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_35 (Length: 260)
Name: NF16809_low_35
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 5243325 - 5243550
Alignment:
| Q |
11 |
catcatcacctcttatgtgctagctaactttaatgtgtgtcaaaaactagtttgttttaggtcatgctgttagttggttatatatatagctaaccaatga |
110 |
Q |
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| T |
5243325 |
catcatcacctcttatgtgctagctaactttaatgtgtgtcaaaaactagtttgttttaggtcatgctgttagttggttatatatatagctaaccaatga |
5243424 |
T |
|
| Q |
111 |
tcaaa--nnnnnnnnnnnnnnntttagtttttctaataaatagctagcatgtggtagtcaatgtttgtgtcttaggtttgtttattttccatataatgtc |
208 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243425 |
tcaaagtgtgtgttgtgtgtgttttagtttttctaataaatagctagcatgtggtagtcaatgtttgtgtcttaggtttgtttattttccatataatgtc |
5243524 |
T |
|
| Q |
209 |
ttgttatgactttctttggtggtagt |
234 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5243525 |
ttgttatgactttctttggtggtagt |
5243550 |
T |
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