View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16809_low_4 (Length: 580)

Name: NF16809_low_4
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16809_low_4
NF16809_low_4
[»] chr7 (25 HSPs)
chr7 (15-390)||(49034842-49035207)
chr7 (218-388)||(36926409-36926579)
chr7 (221-388)||(222916-223083)
chr7 (218-393)||(666186-666361)
chr7 (242-384)||(26215721-26215863)
chr7 (242-391)||(43052279-43052428)
chr7 (242-389)||(42071519-42071666)
chr7 (218-388)||(5776535-5776705)
chr7 (218-382)||(3931318-3931483)
chr7 (218-389)||(7539621-7539792)
chr7 (242-388)||(7443829-7443975)
chr7 (218-389)||(37333696-37333868)
chr7 (252-389)||(17026001-17026139)
chr7 (231-384)||(37106150-37106304)
chr7 (242-388)||(5795500-5795634)
chr7 (218-301)||(388502-388585)
chr7 (236-314)||(8110833-8110911)
chr7 (218-389)||(15433628-15433787)
chr7 (250-339)||(23236784-23236873)
chr7 (218-301)||(28950275-28950359)
chr7 (313-388)||(45174637-45174712)
chr7 (257-339)||(39429503-39429585)
chr7 (257-297)||(23224487-23224527)
chr7 (257-285)||(32077426-32077454)
chr7 (250-362)||(45054819-45054931)
[»] chr5 (28 HSPs)
chr5 (16-385)||(1224567-1224926)
chr5 (218-388)||(18879620-18879790)
chr5 (268-389)||(3805393-3805514)
chr5 (207-388)||(32157344-32157525)
chr5 (218-388)||(27905480-27905650)
chr5 (245-386)||(1840974-1841115)
chr5 (245-388)||(5385086-5385229)
chr5 (231-388)||(27450973-27451130)
chr5 (231-388)||(34720046-34720203)
chr5 (250-388)||(43385798-43385937)
chr5 (231-339)||(39408768-39408876)
chr5 (218-301)||(38523227-38523310)
chr5 (250-388)||(10493379-10493512)
chr5 (222-388)||(20188350-20188516)
chr5 (218-388)||(29322063-29322221)
chr5 (240-385)||(2675305-2675449)
chr5 (231-388)||(26297905-26298062)
chr5 (231-388)||(34724022-34724179)
chr5 (231-339)||(39407030-39407138)
chr5 (250-388)||(26217423-26217561)
chr5 (196-349)||(15931976-15932129)
chr5 (218-299)||(22921520-22921601)
chr5 (231-388)||(26299446-26299603)
chr5 (295-388)||(34856946-34857039)
chr5 (297-388)||(11136712-11136803)
chr5 (289-388)||(19283625-19283724)
chr5 (221-285)||(20191207-20191271)
chr5 (245-336)||(31620013-31620105)
[»] chr8 (10 HSPs)
chr8 (15-388)||(22563263-22563637)
chr8 (242-389)||(11161077-11161224)
chr8 (250-388)||(43966887-43967020)
chr8 (250-391)||(9413266-9413407)
chr8 (218-382)||(33280610-33280772)
chr8 (242-301)||(1091167-1091225)
chr8 (257-388)||(22930859-22930984)
chr8 (245-362)||(12377747-12377864)
chr8 (250-339)||(25731856-25731945)
chr8 (328-388)||(27189633-27189693)
[»] chr3 (21 HSPs)
chr3 (15-388)||(15822958-15823315)
chr3 (221-388)||(52198776-52198943)
chr3 (207-388)||(39471038-39471219)
chr3 (198-389)||(7029134-7029324)
chr3 (250-385)||(38644227-38644361)
chr3 (218-380)||(32688567-32688729)
chr3 (297-388)||(5418043-5418134)
chr3 (206-388)||(53530115-53530296)
chr3 (244-388)||(25252874-25253018)
chr3 (250-389)||(30740731-30740870)
chr3 (242-388)||(46294231-46294377)
chr3 (275-388)||(39133778-39133891)
chr3 (196-388)||(33439191-33439382)
chr3 (250-346)||(39943734-39943830)
chr3 (231-301)||(45714190-45714260)
chr3 (221-388)||(45994791-45994957)
chr3 (328-388)||(41609314-41609374)
chr3 (297-388)||(27040593-27040684)
chr3 (313-388)||(54394106-54394181)
chr3 (244-388)||(33895916-33896060)
chr3 (313-389)||(54432944-54433020)
[»] chr1 (24 HSPs)
chr1 (388-566)||(10564433-10564614)
chr1 (218-385)||(36418523-36418690)
chr1 (219-388)||(48575707-48575876)
chr1 (250-388)||(29678106-29678244)
chr1 (242-389)||(37441807-37441959)
chr1 (242-388)||(32179333-32179479)
chr1 (210-388)||(45654329-45654507)
chr1 (251-388)||(40002320-40002457)
chr1 (203-388)||(45582054-45582239)
chr1 (296-388)||(28005735-28005827)
chr1 (245-388)||(24575300-24575443)
chr1 (303-388)||(47603464-47603549)
chr1 (250-388)||(7955649-7955787)
chr1 (218-389)||(24470496-24470655)
chr1 (240-385)||(23916134-23916278)
chr1 (234-388)||(42936495-42936651)
chr1 (289-388)||(5205151-5205250)
chr1 (221-388)||(7595720-7595887)
chr1 (266-388)||(38061637-38061759)
chr1 (257-389)||(21681631-21681763)
chr1 (242-387)||(35309009-35309150)
chr1 (221-388)||(46265581-46265746)
chr1 (250-389)||(43090034-43090168)
chr1 (328-388)||(14579111-14579171)
[»] chr4 (34 HSPs)
chr4 (15-160)||(79873-80018)
chr4 (262-389)||(79759-79885)
chr4 (242-388)||(43386534-43386680)
chr4 (218-389)||(9469427-9469597)
chr4 (218-389)||(19850131-19850302)
chr4 (242-388)||(49820378-49820524)
chr4 (221-388)||(22183763-22183930)
chr4 (218-381)||(50605462-50605625)
chr4 (242-388)||(21436307-21436453)
chr4 (242-388)||(28266738-28266879)
chr4 (218-388)||(53369062-53369232)
chr4 (218-388)||(48977004-48977174)
chr4 (242-339)||(52813048-52813145)
chr4 (250-362)||(51409116-51409228)
chr4 (257-388)||(55892687-55892811)
chr4 (250-388)||(4275544-4275682)
chr4 (303-389)||(52812966-52813052)
chr4 (218-388)||(44792763-44792921)
chr4 (207-323)||(36543359-36543475)
chr4 (240-382)||(54742089-54742233)
chr4 (242-391)||(12790152-12790289)
chr4 (196-304)||(36156858-36156966)
chr4 (308-388)||(52705593-52705673)
chr4 (303-386)||(7505426-7505509)
chr4 (218-301)||(45674379-45674462)
chr4 (310-388)||(25133933-25134011)
chr4 (295-388)||(51994083-51994176)
chr4 (221-285)||(6874924-6874988)
chr4 (310-390)||(40797152-40797232)
chr4 (334-389)||(18990191-18990246)
chr4 (245-339)||(16743116-16743210)
chr4 (240-301)||(48340238-48340300)
chr4 (326-388)||(49378170-49378232)
chr4 (308-385)||(22720747-22720824)
[»] chr6 (14 HSPs)
chr6 (221-391)||(472823-472993)
chr6 (207-396)||(18961837-18962026)
chr6 (218-389)||(10346211-10346382)
chr6 (242-388)||(7957054-7957200)
chr6 (196-339)||(25181113-25181256)
chr6 (294-388)||(6998576-6998670)
chr6 (205-388)||(7436700-7436882)
chr6 (294-389)||(4442041-4442136)
chr6 (196-301)||(10962370-10962475)
chr6 (242-339)||(12428092-12428189)
chr6 (251-375)||(33109845-33109969)
chr6 (221-387)||(9951363-9951529)
chr6 (296-346)||(8291463-8291513)
chr6 (257-362)||(22295382-22295487)
[»] chr2 (17 HSPs)
chr2 (219-389)||(20986063-20986233)
chr2 (218-388)||(36538077-36538247)
chr2 (242-388)||(44741290-44741436)
chr2 (207-388)||(27633142-27633323)
chr2 (218-360)||(12139394-12139536)
chr2 (218-339)||(41958596-41958717)
chr2 (218-385)||(26435770-26435937)
chr2 (240-388)||(11027287-11027435)
chr2 (242-346)||(39801163-39801267)
chr2 (220-388)||(33830890-33831046)
chr2 (250-388)||(2647602-2647740)
chr2 (218-301)||(33164534-33164617)
chr2 (250-338)||(3409851-3409939)
chr2 (333-388)||(1093914-1093969)
chr2 (231-301)||(30711538-30711608)
chr2 (236-301)||(33475711-33475774)
chr2 (221-285)||(38410211-38410275)
[»] scaffold0316 (1 HSPs)
scaffold0316 (218-388)||(18710-18880)
[»] scaffold0658 (1 HSPs)
scaffold0658 (275-389)||(6420-6534)
[»] scaffold0043 (1 HSPs)
scaffold0043 (298-388)||(16492-16582)
[»] scaffold0106 (1 HSPs)
scaffold0106 (289-386)||(26495-26592)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 15 - 390
Target Start/End: Original strand, 49034842 - 49035207
Alignment:
Q  15 atagtatttaaaattttacgtaagtggtttttagaccaattacaaggtttgtgagctgttttttgtgccctcataaaaaccatagttgtttttgtccctt 114  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49034842 atagtatttaccattttacgtaagtggtttttagaccaattacaaggtttgtgagctgttttttgtgccctcatgaaaaccatagttgtttttgtccctt 49034941  T
Q  115 ggttcatttaatttgagtctagttaatttttatcgagtcgaatcgacttagctcgatttagcttgattcattttcaactatagttatatgatttgagcaa 214  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||          ||||||||||||||| ||||||| ||||||||||||    
T  49034942 ggttcatttaattcgagtctagttaatttttatcaagtcgaatcgacttagctc----------gattcattttcaactctagttatgtgatttgagcaa 49035031  T
Q  215 agaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttc 314  Q
    | ||||||||| ||| |||| ||||| ||||||| |||||||||||| ||||||||||| |||| |||||||| |||||||| |||| |||| |||||||    
T  49035032 acaaactgaacctaacgagccgaatcgaactgttcgtgaaccttaaaagagtcgaactcgagctaaaaaaagagttcgtgtcaaactcgagtcgagtttc 49035131  T
Q  315 gagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctaca 390  Q
    |||||||||||||||||||| |||| |||||| || ||||| ||| |||| |||||||||||||||||||||||||    
T  49035132 gagccgagcaaaatcttatcaagtcgagccgagctcagacatgtttgattcgattcgactcatttccagccctaca 49035207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 36926579 - 36926409
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||||| ||||||| |||||  ||||| ||| ||||||| || |||||||| | ||||||||||||| |||  ||||||||||    
T  36926579 aactgaacctaacgagccgaatcgaactgttcgtgaattttaaatgagccgaactcgagatgaaaaaatagttcgtgtcgaactcgagccgagtttcgag 36926480  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| | || |||||||||||| |||||| || |||||||||||||| || ||||||||||||||||||||    
T  36926479 ccgaaccaattcttatcgagtcgagccgagctcagacaggttcgattcgactcgactcatttccagcccta 36926409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 221 - 388
Target Start/End: Original strand, 222916 - 223083
Alignment:
Q  221 tgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccg 320  Q
    ||||| ||| |||| ||| | ||||||| |||||  ||||||||||| || || ||||||||||||| ||||||||||||| |||| |||||||||||||    
T  222916 tgaacctaacgagccgaaccgaactgttcgtgaattttaaacgagtcaaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccg 223015  T
Q  321 agcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||||| | |||||||||| |||| | || |||||||||||||  || || ||||||||||| |||||    
T  223016 agcaaatttttatcgagtcgagccaagctcagacaggttcgatccgactcaactcatttccaacccta 223083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 218 - 393
Target Start/End: Original strand, 666186 - 666361
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||  ||||||||||| | || |||||||||| |||  ||||||||||    
T  666186 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaacttgagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgag 666285  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctacatgc 393  Q
    |||| | || |||||||||||| |||||| || ||||| ||||| || || ||||||||||||||| |||| ||||    
T  666286 ccgaaccaattcttatcgagtcaagccgagctcagacatgttcggttcgactcgactcatttccagacctagatgc 666361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 242 - 384
Target Start/End: Complemental strand, 26215863 - 26215721
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| ||||||||| ||||||| || |||||||| | ||||||||||||| |||  |||||||||||||| | || |||||||||||| |    
T  26215863 aactgttcgtgaactttaaacgagccgaactcgagttgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcga 26215764  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagc 384  Q
    ||||| || || |||||||| || || ||||||||||||||||    
T  26215763 gccgagctcaggcaggttcggttcgactcgactcatttccagc 26215721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 242 - 391
Target Start/End: Complemental strand, 43052428 - 43052279
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| ||||| ||| ||||||| ||||||||||| | ||||||||||||| |||   ||||||||||||| | || |||||||||||| |    
T  43052428 aactgttcgtgaactttaaatgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccaagtttcgagccgaaccaattcttatcgagtcga 43052329  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagccctacat 391  Q
    ||||| || || |||||||| || || |||||| ||||||||||||||||    
T  43052328 gccgagctcaggcaggttcggttcgactcgactgatttccagccctacat 43052279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 242 - 389
Target Start/End: Complemental strand, 42071666 - 42071519
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||| |||  |||||||||||||| | || |||||| ||||| |    
T  42071666 aactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaattcttattgagtcga 42071567  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    ||||| || ||||| ||| | || || ||||||||||| |||||||||    
T  42071566 gccgagctcagacatgtttggttcgactcgactcattttcagccctac 42071519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 218 - 388
Target Start/End: Original strand, 5776535 - 5776705
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | || |||| |||||  ||||||||| ||||||| ||||||||||| | ||| ||||||||| |||  ||||||||||    
T  5776535 aactgaacctaacgagccgaaccgaattgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcttgtcgaactcgagccgagtttcgag 5776634  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    | || | || |||||||||||| |||||| || || |||||||| || || ||||||||||||||||||||    
T  5776635 ctgaactaattcttatcgagtcgagccgagctcaggcaggttcggttcgactcgactcatttccagcccta 5776705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 218 - 382
Target Start/End: Original strand, 3931318 - 3931483
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaa-ttcgtgtcgaacttgagttgagtttcga 316  Q
    |||||||| ||| |||| ||| | ||||||| |||||| |||||||||  |||||| |||||||||||  | ||||||||||||| |||  |||||||||    
T  3931318 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaaatagttcgtgtcgaactcgagccgagtttcga 3931417  T
Q  317 gccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttcca 382  Q
    ||||| | || |||||||||||| |||||| || ||||||||||| || || || |||||||||||    
T  3931418 gccgaaccaattcttatcgagtcgagccgagctcagacaggttcggttggactcaactcatttcca 3931483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 218 - 389
Target Start/End: Original strand, 7539621 - 7539792
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||  |||||||| | ||||||| || ||| ||||||||| ||||||| ||||||||||| |||||| |||||||| |||  ||||||||||    
T  7539621 aactgaacctatcgagctgaaccgaactgttcgtaaactttaaacgagccgaactcgagctgaaaaaaaaattcgagtcgaactcgagccgagtttcgag 7539720  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    | || | || |||||||||||| |||||| || ||||  |||||| |  | ||| |||||||||||||||||    
T  7539721 ctgaaccaattcttatcgagtcgagccgagctcagacgagttcgactcaactcggctcatttccagccctac 7539792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 7443975 - 7443829
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| |||||||||  |||||| ||||||||||| | || |||||||||| |||  ||||||||| |||| | || |||||||||||| |    
T  7443975 aactgttcgtgaacattaaacgagctgaactcgagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgaaccgaaccaattcttatcgagtcga 7443876  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| || |||||| |||| || || |||||||||||||| |||||    
T  7443875 gccgagctcagacagattcggttcgactcgactcatttccaacccta 7443829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 218 - 389
Target Start/End: Complemental strand, 37333868 - 37333696
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaa-ttcgtgtcgaacttgagttgagtttcga 316  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| |||||||||||  | ||| | ||||||| |||  |||||||||    
T  37333868 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaaatagttcatatcgaactcgagccgagtttcga 37333769  T
Q  317 gccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    ||||| | || |||||||||||| |||| | || || |||||||| || || |||||||||||||| ||||||    
T  37333768 gccgaaccaattcttatcgagtcgagccaagctcaggcaggttcggttcgactcgactcatttccaaccctac 37333696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 252 - 389
Target Start/End: Original strand, 17026001 - 17026139
Alignment:
Q  252 gaaccttaaacgagtcgaactcaagctgaaaaaaga-attcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaacta 350  Q
    |||| ||||||||| ||||||| || | |||||| | |||||| || |||| |||| |||||||||||||| | || |||||||||||| || ||| ||     
T  17026001 gaactttaaacgagccgaactcgagttaaaaaaaaagattcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagtcgagctc 17026100  T
Q  351 agacaggttcgattagattcgactcatttccagccctac 389  Q
    ||||| |||||| | || ||||||||||||||| |||||    
T  17026101 agacaagttcgactcgactcgactcatttccagtcctac 17026139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 384
Target Start/End: Complemental strand, 37106304 - 37106150
Alignment:
Q  231 gagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaa-ttcgtgtcgaacttgagttgagtttcgagccgagcaaaatc 329  Q
    |||| ||| ||||||||| |||||| ||||| ||| |||||| |||||||||||| || |||||||| |||| ||   |||  ||||  ||||  || ||    
T  37106304 gagccgaaccaaactgttcgtgaactttaaatgagccgaacttaagctgaaaaaaaaaattcgtgtcaaactcgaaccgaggctcgaatcgagtcaattc 37106205  T
Q  330 ttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagc 384  Q
    ||| |||||| || |||||| |||||||||||||| || ||||||||||||||||    
T  37106204 ttaacgagtcgagtcgaactcagacaggttcgattcgactcgactcatttccagc 37106150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 5795500 - 5795634
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||            ||||||||| | || |||||||||||| |    
T  5795500 aactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaac------------tcgagccgaaccaattcttatcgagtcga 5795587  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| || || ||||||||||| || ||||||||||||||| ||||    
T  5795588 gccgagctcaggcaggttcgattcgactcgactcatttccagtccta 5795634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 388585 - 388502
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaact 301  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| ||||||||||| | |||||||||||||    
T  388585 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaact 388502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 8110911 - 8110833
Alignment:
Q  236 gaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttc 314  Q
    ||||| ||||||| |||||| |||||||||  |||||| ||||||||||||| ||||||||||||| |||  |||||||    
T  8110911 gaatcgaactgtttgtgaactttaaacgagctgaactcgagctgaaaaaagagttcgtgtcgaactcgagccgagtttc 8110833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 389
Target Start/End: Complemental strand, 15433787 - 15433628
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | |||||||  ||||| ||||||||| ||||||| ||||||||||| | ||||||||||||            |||||    
T  15433787 aactgaacctaacgagccgaaccgaactgttcatgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaac------------tcgag 15433700  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    |||| | || |||||||||||| |||||| || || |||||| | || || |||||||||||||||||||||    
T  15433699 ccgaaccaattcttatcgagtcaagccgagctcaggcaggtttggttcgactcgactcatttccagccctac 15433628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 23236784 - 23236873
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagct-gaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtc 339  Q
    |||||| ||||||||| |||||||||||| ||||||||  ||||| | ||| |||||| |||||||||||||||| || ||||||||||||    
T  23236784 gtgaactttaaacgagccgaactcaagctagaaaaaag-gttcgtattgaatttgagtcgagtttcgagccgagctaattcttatcgagtc 23236873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 28950275 - 28950359
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctg-aaaaaagaattcgtgtcgaact 301  Q
    |||||||| ||| |||||||| | ||||||| |||||| ||||||||| ||||||| ||||| |||||| | |||||||||||||    
T  28950275 aactgaacctaacgagctgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaaatagttcgtgtcgaact 28950359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 388
Target Start/End: Complemental strand, 45174712 - 45174637
Alignment:
Q  313 tcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||||| | || |||||| ||||| |||||| || ||||||||||| || || ||||||||||| ||||||||    
T  45174712 tcgagccgaaccaattcttattgagtcgagccgagctcagacaggttcggttcgactcgactcattttcagcccta 45174637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 39429585 - 39429503
Alignment:
Q  257 ttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtc 339  Q
    |||||||||| |||||| || | |||||||| ||||||||||||| || |  ||||||||| ||| | || ||||||||||||    
T  39429585 ttaaacgagttgaactcgagtttaaaaaagagttcgtgtcgaactcgaatcaagtttcgagtcgaaccaattcttatcgagtc 39429503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 23224487 - 23224527
Alignment:
Q  257 ttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcg 297  Q
    ||||||||||| ||||||||||||||||| |||| ||||||    
T  23224487 ttaaacgagtcaaactcaagctgaaaaaataatttgtgtcg 23224527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 32077426 - 32077454
Alignment:
Q  257 ttaaacgagtcgaactcaagctgaaaaaa 285  Q
    |||||||||||||||||||||||||||||    
T  32077426 ttaaacgagtcgaactcaagctgaaaaaa 32077454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 362
Target Start/End: Complemental strand, 45054931 - 45054819
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| ||||||||| ||||||| |||  ||||||   ||||| | ||||| |||| ||||||| |||||| | || |||||||||||| |||| | ||    
T  45054931 gtgaactttaaacgagccgaactcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcaagccgaaccaattcttatcgagtcgagccaagct 45054832  T
Q  350 aagacaggttcga 362  Q
     ||||| ||||||    
T  45054831 cagacaagttcga 45054819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 1224926 - 1224567
Alignment:
Q  16 tagtatttaaaattttacgtaagtggtttttagaccaattacaaggtttgtgagctgttttttgtgccctcataaaaaccatagttgtttttgtcccttg 115  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1224926 tagtatttaccattttacgtaagtggtttttagaccaattacaaggtttgtgagctgttttttgtgccctcataaaaaccatagttgtttttgtcccttg 1224827  T
Q  116 gttcatttaatttgagtctagttaatttttatcgagtcgaatcgacttagctcgatttagcttgattcattttcaactatagttatatgatttgagcaaa 215  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||| ||          ||||||||||||||| ||||||| |||||||||||||    
T  1224826 gttcatttaattcgagtctagttaatttttatcgagttgaatcgacttagatc----------gattcattttcaactctagttatgtgatttgagcaaa 1224737  T
Q  216 gaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcg 315  Q
     ||||||||| ||| |||| ||| | ||||||| |||||||||||||||||||||||| ||| ||| ||||| ||||||||||||| |||| ||||||||    
T  1224736 caaactgaacctaacgagccgaaccgaactgttcgtgaaccttaaacgagtcgaactcgagcggaataaagagttcgtgtcgaactcgagtcgagtttcg 1224637  T
Q  316 agccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcc 385  Q
    || ||||||||||||||| ||||| |||||| || |||||||||||||| |||||||||||||| |||||    
T  1224636 agtcgagcaaaatcttattgagtcgagccgagcttagacaggttcgattcgattcgactcattttcagcc 1224567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 18879790 - 18879620
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||| ||| ||||||| ||||||||||| | ||||||||||||| |||   |||||||||    
T  18879790 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaatgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccaagtttcgag 18879691  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| | || |||||||||||| ||||||||| |||||| |||| || || ||||||||||| ||| ||||    
T  18879690 ccgaaccaattcttatcgagtcgagccgaactcagacagattcggttcgactcgactcattttcagtccta 18879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 268 - 389
Target Start/End: Original strand, 3805393 - 3805514
Alignment:
Q  268 gaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattaga 367  Q
    |||||| ||||||||||| | ||||||||||||| |||  |||||||||||||| | || |||||||||||| |||||| || ||||||||||| || ||    
T  3805393 gaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagccgagctcagacaggttcggttcga 3805492  T
Q  368 ttcgactcatttccagccctac 389  Q
     |||||||||||||||||||||    
T  3805493 ctcgactcatttccagccctac 3805514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 207 - 388
Target Start/End: Original strand, 32157344 - 32157525
Alignment:
Q  207 ttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagt 306  Q
    |||||||||  |||||||  ||| |||| ||| | ||||| | |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||| |||     
T  32157344 ttgagcaaacgaactgaatctaacgagccgaaccgaactggtcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagc 32157443  T
Q  307 tgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
      ||||||||||||| | || |||||||||||| |||||| |  ||||||||||  || || ||||||||||||||||||||    
T  32157444 caagtttcgagccgaaccaattcttatcgagtcgagccgagcccagacaggttcagttcgactcgactcatttccagcccta 32157525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 27905650 - 27905480
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| |||| ||  |||||||||| | ||||||||||||| |||  |||||||| |    
T  27905650 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaattcgggctgaaaaaatagttcgtgtcgaactcgagccgagtttcgtg 27905551  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| | || ||||||| |||| |||||| || ||| | ||||| || || ||||||||||||||||||||    
T  27905550 ccgaaccaattcttatcaagtcgagccgagctcagataagttcggttcgactcgactcatttccagcccta 27905480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 245 - 386
Target Start/End: Original strand, 1840974 - 1841115
Alignment:
Q  245 tgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagcc 344  Q
    |||| |||||| ||||||||| ||||||| || | |||||||  ||||| ||||||| |||| |||||||||||||| | || |||||||||||| || |    
T  1840974 tgttcgtgaactttaaacgagccgaactcgagttaaaaaaagggttcgtatcgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagtc 1841073  T
Q  345 gaactaagacaggttcgattagattcgactcatttccagccc 386  Q
    || || ||||||||| | || || ||||||||||||||||||    
T  1841074 gagctcagacaggtttggttcgactcgactcatttccagccc 1841115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 245 - 388
Target Start/End: Original strand, 5385086 - 5385229
Alignment:
Q  245 tgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagcc 344  Q
    |||| |||||| ||||||||||||||||| |||| |||||||| ||||||| ||||| ||||  ||||||||||||| |||| | | ||||| || |  |    
T  5385086 tgttcgtgaactttaaacgagtcgaactcgagctaaaaaaagagttcgtgttgaactcgagtcaagtttcgagccgaacaaattttaatcgaatcgaatc 5385185  T
Q  345 gaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    || || ||| | |||||||| || ||||||||||||||||||||    
T  5385186 gagctcagaaaagttcgattcgactcgactcatttccagcccta 5385229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 388
Target Start/End: Original strand, 27450973 - 27451130
Alignment:
Q  231 gagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatct 330  Q
    |||||||| | ||||||| |||||| ||||||||| ||||||| || | ||||||   ||||  ||||||| ||||||||||||||||||| | || |||    
T  27450973 gagctgaaccgaactgttcgtgaactttaaacgagccgaactcgagtttaaaaaaatgttcgcttcgaactcgagttgagtttcgagccgaaccaattct 27451072  T
Q  331 tatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||||| |  ||| || ||||||||| || | || |||||||||||||| |||||    
T  27451073 tatcgagtcgaatcgagctcagacaggtttgactcgactcgactcatttccaacccta 27451130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 388
Target Start/End: Original strand, 34720046 - 34720203
Alignment:
Q  231 gagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatct 330  Q
    |||||||| | ||||||| |||||| |||||||||  |||||| |||| |||||| | ||||  ||||||| |||| ||||||||| |||| | || |||    
T  34720046 gagctgaaccgaactgttcgtgaactttaaacgagctgaactcgagcttaaaaaaaagttcgcttcgaactcgagtcgagtttcgaaccgaaccaattct 34720145  T
Q  331 tatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||||| |  ||| ||  ||||||||||| | || ||||||||||||||||||||    
T  34720146 tatcgagtcgaatcgagctcggacaggttcgactcgactcgactcatttccagcccta 34720203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 43385937 - 43385798
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaa-ttcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaac 348  Q
    |||||| ||||||||| ||||||||||||||||||| || || |||||||||| |||  ||||||||||| || | || |||||||||||| |||||| |    
T  43385937 gtgaactttaaacgagccgaactcaagctgaaaaaaaaagtttgtgtcgaactcgagccgagtttcgagctgaaccaattcttatcgagtcgagccgagc 43385838  T
Q  349 taagacaggttcgattagattcgactcatttccagcccta 388  Q
    | ||||  |||||| | || ||| | ||||||||||||||    
T  43385837 tcagacgagttcgactcgactcggcacatttccagcccta 43385798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 339
Target Start/End: Complemental strand, 39408876 - 39408768
Alignment:
Q  231 gagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatct 330  Q
    |||||||| | ||||||| |||||| ||||||||| ||||||| |||| |||||| | ||||  ||||||| |||| |||||||||||||| | || |||    
T  39408876 gagctgaaccgaactgttcgtgaactttaaacgagccgaactcgagcttaaaaaaaagttcgcttcgaactcgagtcgagtttcgagccgaaccaattct 39408777  T
Q  331 tatcgagtc 339  Q
    |||||||||    
T  39408776 tatcgagtc 39408768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 38523227 - 38523310
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaact 301  Q
    |||||||| ||| |||| ||| ||||||||| |||||| ||||||||| ||||||| ||||||||||| | |||||||||||||    
T  38523227 aactgaacctaacgagccgaaccaaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaact 38523310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 10493512 - 10493379
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| ||||||||| ||||||  || ||||||||   ||||| ||||||| |||| |||||||||||||| | |  |||||||||||| |||     |    
T  10493512 gtgaactttaaacgagccgaacttgagttgaaaaaaaggttcgtttcgaactcgagtcgagtttcgagccgaaccatttcttatcgagtcgagc-----t 10493418  T
Q  350 aagacaggttcgattagattcgactcatttccagcccta 388  Q
     |||||||||||||| || ||||||||||||||||||||    
T  10493417 cagacaggttcgattcgactcgactcatttccagcccta 10493379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 222 - 388
Target Start/End: Complemental strand, 20188516 - 20188350
Alignment:
Q  222 gaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccga 321  Q
    |||||||| |||| ||| ||||||||| |||||| |||||||||  |||||  || || ||||| | |||||||| |||| ||   ||| ||||| ||||    
T  20188516 gaacttaatgagccgaaccaaactgttcgtgaactttaaacgagcggaacttgagttggaaaaaaagttcgtgtcaaactcgatccgagattcgaaccga 20188417  T
Q  322 gcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
     |||| |||||  ||||| || |||||| ||||| |||||||| || | ||||||||||||||||||    
T  20188416 acaaattcttaatgagtcgagtcgaactcagacaagttcgattcgacttgactcatttccagcccta 20188350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 29322221 - 29322063
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||| ||| |||||| ||||||||| ||||||| ||||||||||| | |||||||||||||            ||||    
T  29322221 aactgaacctaacgagccgaaccgaacagttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaact------------cgag 29322134  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| | || |||||||||||| |||||| || || |||||||| || || ||||||||||||||||||||    
T  29322133 ccgaaccaattcttatcgagtcgagccgagctcaggcaggttcggttcgactcgactcatttccagcccta 29322063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 385
Target Start/End: Complemental strand, 2675449 - 2675305
Alignment:
Q  240 caaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtc 339  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||| | ||||| || | || ||   ||  ||||| |||||| || ||||| ||| ||    
T  2675449 caaactgttcgtgaactttaaacgagtcgaactcgagctgaaaaaa-agttcgtatcaagctcgaaccgaagttcgaaccgagccaattcttaacgaatc 2675351  T
Q  340 cagccgaactaagacaggttcgattagattcgactcatttccagcc 385  Q
     || |||||| ||||| |||||||| || ||| |||||||||||||    
T  2675350 gagtcgaacttagacaagttcgattcgactcggctcatttccagcc 2675305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 388
Target Start/End: Complemental strand, 26298062 - 26297905
Alignment:
Q  231 gagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatct 330  Q
    |||||||| | |||| || |||||| ||||||||| ||||||| || | ||||||   ||||  ||||||| || | |||||||||||||| | || |||    
T  26298062 gagctgaaccgaactattcgtgaactttaaacgagccgaactcgagtttaaaaaaaggttcgcttcgaactcgaatcgagtttcgagccgaaccaattct 26297963  T
Q  331 tatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||||| |  ||| || | ||||||| || | |||||||||||||| ||||||||    
T  26297962 tatcgagtcgaatcgagctcacacaggtttgacttgattcgactcattttcagcccta 26297905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 388
Target Start/End: Original strand, 34724022 - 34724179
Alignment:
Q  231 gagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatct 330  Q
    |||||||| | ||||||| ||||||  ||||||||  |||||| |||| ||||||   ||||  ||||||| |||| ||||||||| | || | || |||    
T  34724022 gagctgaaccgaactgttcgtgaactctaaacgagctgaactcgagcttaaaaaaaggttcgcttcgaactcgagtcgagtttcgaactgaaccaattct 34724121  T
Q  331 tatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||||| |  ||| ||  ||||||||||| | || ||||||||||||||||||||    
T  34724122 tatcgagtcgaatcgagctcggacaggttcgactcgactcgactcatttccagcccta 34724179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 339
Target Start/End: Complemental strand, 39407138 - 39407030
Alignment:
Q  231 gagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatct 330  Q
    |||||||| | ||||||| |||||| ||||||||| ||||||| |||| |||||| | |||   ||||||| |||| ||||||||| |||| | || |||    
T  39407138 gagctgaaccgaactgttcgtgaactttaaacgagccgaactcgagcttaaaaaaaagttcacttcgaactcgagtcgagtttcgaaccgaaccaattct 39407039  T
Q  331 tatcgagtc 339  Q
    |||||||||    
T  39407038 tatcgagtc 39407030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 26217561 - 26217423
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| ||||||||| ||||||  |||  ||||||   ||||| | ||||| |||| |||||||||||||| | || |||||| ||||| | |||| ||    
T  26217561 gtgaactttaaacgagccgaactggagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccgaaccaattcttattgagtcgaaccgagct 26217462  T
Q  350 aagacaggttcgattagattcgactcatttccagcccta 388  Q
     ||||| |||||| | || |||||||||||||| |||||    
T  26217461 cagacaagttcgactcgactcgactcatttccaacccta 26217423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 349
Target Start/End: Complemental strand, 15932129 - 15931976
Alignment:
Q  196 agttatatgatttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgt 295  Q
    |||||| |||||||| ||||  |||||||| ||  |||| ||| | ||||||| |||||| ||||||||  ||||||| ||  ||||||||| |||||||    
T  15932129 agttatgtgatttgaacaaacgaactgaacctatcgagccgaaccgaactgttcgtgaactttaaacgaaccgaactcgagtcgaaaaaagagttcgtgt 15932030  T
Q  296 cgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
     ||||| ||   ||||||| ||| || | || |||||||||||| || ||||||    
T  15932029 tgaactcgaaccgagtttcaagctgaaccaattcttatcgagtcgagtcgaact 15931976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 22921601 - 22921520
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaa 299  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| || |||||||| | |||||||||||    
T  22921601 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagatgaaaaaatagttcgtgtcgaa 22921520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 388
Target Start/End: Complemental strand, 26299603 - 26299446
Alignment:
Q  231 gagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatct 330  Q
    |||||||| | ||||||| |||||| ||||||||| ||||||| || | ||||||   |||   ||||||| |||| |||||||||||||| | || |||    
T  26299603 gagctgaaccgaactgttcgtgaactttaaacgagccgaactcgagtttaaaaaaaggttcacttcgaactcgagtcgagtttcgagccgaaccaattct 26299504  T
Q  331 tatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||||| |  ||| || ||||| ||| || | || ||||||||||| || |||||    
T  26299503 tatcgagtcgaatcgagctcagacaagtttgactcgactcgactcattttcaacccta 26299446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 388
Target Start/End: Complemental strand, 34857039 - 34856946
Alignment:
Q  295 tcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||| ||||  ||||||||||||| | || |||||||||||| |  |||||| |||||| ||||| | || ||||||||||||||| ||||    
T  34857039 tcgaactcgagtcaagtttcgagccgaaccaattcttatcgagtcgaatcgaactcagacagattcgactcgactcgactcatttccagtccta 34856946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 388
Target Start/End: Original strand, 11136712 - 11136803
Alignment:
Q  297 gaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| |||| |||||||||||||| |  | ||||||||| || ||||||  | ||||| |||||| | || ||||||||||||||||||||    
T  11136712 gaactcgagtcgagtttcgagccgaacctattcttatcgaatcgagccgagttcagacaagttcgactcgactcgactcatttccagcccta 11136803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 388
Target Start/End: Original strand, 19283625 - 19283724
Alignment:
Q  289 ttcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| ||||||| |||| |||||||||||  | | || |||||||||||| || ||| || ||| | ||||||||  | ||||||||||||||||||||    
T  19283625 ttcgtatcgaactcgagtcgagtttcgagctaaaccaattcttatcgagtcgagtcgagctcagataagttcgattctactcgactcatttccagcccta 19283724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 20191207 - 20191271
Alignment:
Q  221 tgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaa 285  Q
    ||||| ||| |||| ||| ||||||||| |||||| ||||||||| ||||||  |||||||||||    
T  20191207 tgaacctaatgagccgaaccaaactgtttgtgaactttaaacgagccgaacttgagctgaaaaaa 20191271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 336
Target Start/End: Complemental strand, 31620105 - 31620013
Alignment:
Q  245 tgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaa-ttcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcga 336  Q
    |||| |||||||||||||||||||||||  || |||||||| ||  ||||||| |||||||   |||||| |||| || | ||||||||||||    
T  31620105 tgttcgtgaaccttaaacgagtcgaacttgagttgaaaaaaaaagctcgtgtcaaacttgaaccgagttttgagctgaaccaaatcttatcga 31620013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 388
Target Start/End: Complemental strand, 22563637 - 22563263
Alignment:
Q  15 atagtatttaaaattttacgtaagtggtttttagaccaattacaaggtttgtgagctgttttttgtgccctcataaaaaccatagttgtttttgtccctt 114  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22563637 atagtatttaccattttacgtaagtggtttttagaccaattacaaggtttctgagctgttttttgtgccctcataaaaaccatagttgtttttgtccctt 22563538  T
Q  115 ggttcatttaatttgagtctagttaatttttatcgagtcgaatcga-cttagc-----tcgatttagcttgattcattttcaactatagttatatgattt 208  Q
    ||||||||||||| |||||||||||||||||||||||||||||| | || |||     |||| |||||| || |||||||||||| ||||||| ||||||    
T  22563537 ggttcatttaattcgagtctagttaatttttatcgagtcgaatcaagctgagctaggttcgacttagctcgactcattttcaactctagttatgtgattt 22563438  T
Q  209 gagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttg 308  Q
    ||||||| ||| ||||| ||| || | ||| | ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||| |    
T  22563437 gagcaaacaaattgaacctaacgaaccgaaccgaactgttcgtgaaccttaaacgagtcgaactcgagctgaaaaaagagttcgtgttgaactcgagtcg 22563338  T
Q  309 agtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||||||||||||||||||||||||||  |||||| || |||||     |||| |||||||||||||||||||||||    
T  22563337 agtttcgagccgagcaaaatcttatcgagttgagccgagctcagaca-----gattcgattcgactcatttccagcccta 22563263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 242 - 389
Target Start/End: Complemental strand, 11161224 - 11161077
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| |||||||||  |||||| ||||||||||| | |||||| |||||| |||  ||| |||||||||| | || |||||||||||  |    
T  11161224 aactgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtggcgaactcgagccgaggttcgagccgaaccaattcttatcgagtgga 11161125  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    ||||| || || ||||| || || || ||||||||||| || ||||||    
T  11161124 gccgagctcaggcaggtccggttcgactcgactcatttgcaaccctac 11161077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 43967020 - 43966887
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| ||||||||| ||||||| |||  |||||| ||||||| | ||||| |||| |||||||||||||| | || |||||||||||| ||||||  |    
T  43967020 gtgaactttaaacgagccgaactcgagcccaaaaaaaaattcgttttgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagccgagtt 43966921  T
Q  350 aagacaggttcgattagattcgactcatttccagcccta 388  Q
     ||||| ||||     || ||||||||||||||||||||    
T  43966920 cagacaagttc-----gactcgactcatttccagcccta 43966887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 9413266 - 9413407
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| ||||| ||| ||||||  |||| ||||||   |||||||||||||  ||| |||||||||||||| | |  |||||||||||| || ||| ||    
T  9413266 gtgaactttaaatgagccgaacttgagctaaaaaaaaggttcgtgtcgaactcaagtcgagtttcgagccgaaccatttcttatcgagtcgagtcgagct 9413365  T
Q  350 aagacaggttcgattagattcgactcatttccagccctacat 391  Q
     ||||| ||||  || || |||||||||||||||||||||||    
T  9413366 cagacaagttcagttcgactcgactcatttccagccctacat 9413407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 382
Target Start/End: Original strand, 33280610 - 33280772
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| |||| |||| |||||| ||||| ||||||||||  ||||||||||||  |||||||| |||| ||  |||| ||| |     
T  33280610 aactgaacctaatgagccgaaccaaattgttcgtgaactttaaatgagtcgaacttgagctgaaaaaag--ttcgtgtcaaactcgaactgaggttctaa 33280707  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttcca 382  Q
    | || | || ||| | |||||| || |||||| |||||||||||||| || ||||||||||||||    
T  33280708 ctgatccaattctaaacgagtcgagtcgaactcagacaggttcgattcgactcgactcatttcca 33280772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 1091225 - 1091167
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaact 301  Q
    ||||||| |||||| ||||||||||||||||||| || |||||||| |||||||||||||    
T  1091225 aactgttcgtgaactttaaacgagtcgaactcaaact-aaaaaagagttcgtgtcgaact 1091167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 388
Target Start/End: Original strand, 22930859 - 22930984
Alignment:
Q  257 ttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacag 356  Q
    |||||||||| |||||| ||||||||||| | || |||||||||| |||  |||||||||||||| | || |||||||||||     |||  | ||||||    
T  22930859 ttaaacgagt-gaactcgagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagt-----cgagttcagacag 22930952  T
Q  357 gttcgattagattcgactcatttccagcccta 388  Q
    ||||| || || ||||||||||||||| ||||    
T  22930953 gttcggttcgactcgactcatttccagtccta 22930984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 362
Target Start/End: Complemental strand, 12377864 - 12377747
Alignment:
Q  245 tgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagcc 344  Q
    |||| |||||| |||||||||  |||||| || | |||||| | ||||| ||||||| |||| ||||||||||| || || | ||||||||| || || |    
T  12377864 tgtttgtgaactttaaacgagatgaactcgagttaaaaaaatagttcgtttcgaactcgagtcgagtttcgagctgaacacattcttatcgaatcgagtc 12377765  T
Q  345 gaactaagacaggttcga 362  Q
    ||  | ||||||||||||    
T  12377764 gagttcagacaggttcga 12377747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 25731856 - 25731945
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtc 339  Q
    |||||| ||||| ||| |||||||||| | |||||||  || |  |||||||||||| || ||||||||||| | || ||||||||||||    
T  25731856 gtgaactttaaatgagccgaactcaagttaaaaaaagggtttgcatcgaacttgagtcgactttcgagccgaaccaattcttatcgagtc 25731945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 27189633 - 27189693
Alignment:
Q  328 tcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| |||||| || ||| || ||||| |||||||| || ||||||||||||||||||||    
T  27189633 tcttaacgagtcgagtcgagctcagacaagttcgattcgactcgactcatttccagcccta 27189693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 15 - 388
Target Start/End: Original strand, 15822958 - 15823315
Alignment:
Q  15 atagtatttaaaattttacgtaagtggtttttagaccaattacaaggtttgtgagctgttttttgtgccctcataaaaacc------atagttgtttttg 108  Q
    ||||||||||  ||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||    
T  15822958 atagtatttaccattttacgttaatggttttttgaccaattacaaggtttgtgagctgttttttgtgccctcataaaaaccataaccatagttgtttttg 15823057  T
Q  109 tcccttggttcatttaatttgagtctagttaatttttatcgagtcgaatcgacttagctcgatttagcttgattcattttcaactatagttatatgattt 208  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||          |||| |||||||||| ||||||| ||||||    
T  15823058 tcccttggttcatttaattcgagtctagttaatttttattgagtcgaatcgacttagctc----------gattaattttcaactctagttatgtgattt 15823147  T
Q  209 gagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttg 308  Q
    ||||||| | ||||||||||| |||| |||       |||  ||||||||||||||||||||||| ||||||||||||| ||| ||||||||| |||| |    
T  15823148 gagcaaacatactgaacttaacgagccgaa-------gttgatgaaccttaaacgagtcgaactcgagctgaaaaaagagttcatgtcgaactcgagtcg 15823240  T
Q  309 agtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||||||||||||||||||| ||||||     |||||| || ||| |||||||||| |||||||||||||| || |||||    
T  15823241 agtttcgagccgagcaaaattttatcg-----agccgagctcagataggttcgatttgattcgactcattttcatcccta 15823315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 221 - 388
Target Start/End: Complemental strand, 52198943 - 52198776
Alignment:
Q  221 tgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccg 320  Q
    ||||| ||| |||| ||| ||||||||| |||||| ||||||||||| || || ||||||||||||| ||||||||||||| |||| |||||||||||||    
T  52198943 tgaacctaacgagccgaaccaaactgtttgtgaactttaaacgagtcaaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccg 52198844  T
Q  321 agcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| | || ||||||||| |||||| || ||||||||||| || || ||||||||||||||||||||    
T  52198843 agcagattcatatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccagcccta 52198776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 207 - 388
Target Start/End: Original strand, 39471038 - 39471219
Alignment:
Q  207 ttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagt 306  Q
    |||||||||  |||| ||| ||| |||| ||||| ||||||| |||||| |||||||||  |||||| ||||||||||| | ||||||||||||| |||     
T  39471038 ttgagcaaacgaactaaacctaacgagccgaatcgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtgtcgaactcgagc 39471137  T
Q  307 tgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
     |||||||||||||| | || |||||||||||| ||||||  | ||||||||||| || || ||||||||||||||||||||    
T  39471138 cgagtttcgagccgaaccaattcttatcgagtcgagccgagttcagacaggttcggttcgactcgactcatttccagcccta 39471219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 198 - 389
Target Start/End: Complemental strand, 7029324 - 7029134
Alignment:
Q  198 ttatatgatttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcg 297  Q
    |||| ||||||||||||| ||||| ||| ||| || |  || |||| |||| || ||| ||||||||| |||||| || || |||||| |||||||||||    
T  7029324 ttatgtgatttgagcaaacaaactaaacctaaagaacctaaccaaattgttcgtaaactttaaacgagccgaacttaaacttaaaaaa-aattcgtgtcg 7029226  T
Q  298 aacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    |||| |||  ||||||||||| || |||| |||||||||||| || |||||| |||   |||||| | || |||||||||||||||||||||    
T  7029225 aactcgagccgagtttcgagctgaacaaattcttatcgagtcgagtcgaactcagatgagttcgactggactcgactcatttccagccctac 7029134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 250 - 385
Target Start/End: Original strand, 38644227 - 38644361
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| |||||| ||||||| || ||||||||||| | ||||||||||||| |||| |||||| ||||||| |||| ||||||| |||| |||||| ||    
T  38644227 gtgaactttaaacaagtcgaattcgagctgaaaaaa-agttcgtgtcgaactcgagtcgagttttgagccgaacaaattcttatctagtcgagccgagct 38644325  T
Q  350 aagacaggttcgattagattcgactcatttccagcc 385  Q
     ||||||||||| || || || ||||||||||||||    
T  38644326 cagacaggttcggttcgactccactcatttccagcc 38644361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 380
Target Start/End: Complemental strand, 32688729 - 32688567
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| ||||||||||| | ||| |||| |||| ||| |||||||||||    
T  32688729 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcatgtcaaactcgagctgagtttcgag 32688630  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttc 380  Q
    |||| | || | |||||||||| |||||| || |||||| |||| ||  | ||||||||||||    
T  32688629 ccgaaccaatttttatcgagtcgagccgagctcagacagattcggttcaactcgactcatttc 32688567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 297 - 388
Target Start/End: Complemental strand, 5418134 - 5418043
Alignment:
Q  297 gaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| |||| |||||||||||||| | || |||||||||||| ||||||||| ||||| |||||| | || ||||||||||||||||||||    
T  5418134 gaactcgagtcgagtttcgagccgaaccaattcttatcgagtcaagccgaactcagacaagttcgactcgactcgactcatttccagcccta 5418043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 388
Target Start/End: Original strand, 53530115 - 53530296
Alignment:
Q  206 tttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgag 305  Q
    ||||| |||| ||| |||| |||| |||||||| ||||||||| |||||| ||||||||| ||||||  ||||||||||| | || ||||  |||| ||     
T  53530115 tttgaacaaacaaattgaatttaatgagctgaaccaaactgttcgtgaactttaaacgagccgaacttgagctgaaaaaa-agtttgtgttaaactcgaa 53530213  T
Q  306 ttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
      ||| ||| | | |||| || ||||| |||||| || ||| || ||||| |||||||| |||||||||||||||||||||||    
T  53530214 ccgaggttcaaactgagccaattcttaacgagtcgagtcgagctcagacatgttcgattcgattcgactcatttccagcccta 53530296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 388
Target Start/End: Complemental strand, 25253018 - 25252874
Alignment:
Q  244 ctgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagc 343  Q
    ||||| |||||| ||||||||| ||||||| |||| || ||| | ||||| | ||||| |||| |||||| ||||||| | || |||||||||||| ||     
T  25253018 ctgttcgtgaactttaaacgagccgaactcgagcttaacaaaaagttcgtattgaactcgagtcgagttttgagccgaaccaattcttatcgagtcgagt 25252919  T
Q  344 cgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
     || || |||||||||||| | || |||||||||||| |||||||    
T  25252918 tgagctcagacaggttcgactcgactcgactcatttctagcccta 25252874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 250 - 389
Target Start/End: Complemental strand, 30740870 - 30740731
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| ||||||||| ||||||| |||| ||||||   ||||||||||||| |||| |||||||||||| | | |  |||||||||||| ||   | ||    
T  30740870 gtgaactttaaacgagccgaactcgagctaaaaaaaaggttcgtgtcgaactcgagtcgagtttcgagccaaaccatttcttatcgagtcaagtaaagct 30740771  T
Q  350 aagacaggttcgattagattcgactcatttccagccctac 389  Q
     ||||| ||||| || || |||||||||||||||||||||    
T  30740770 cagacaagttcggttcgactcgactcatttccagccctac 30740731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 46294231 - 46294377
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| | ||||||||||||||  |||||| |||| |||||||| |||||||| | || |||| ||||||||| | || | || |||||| | ||| |    
T  46294231 aactgttcgcgaaccttaaacgagctgaactcgagctaaaaaaagagttcgtgtcaatctcgagtcgagtttcgaactgaaccaattcttattgcgtcga 46294330  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| || ||||  |||||| | || ||||||||||||||||||||    
T  46294331 gccgagctcagacgagttcgactcgactcgactcatttccagcccta 46294377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 388
Target Start/End: Complemental strand, 39133891 - 39133778
Alignment:
Q  275 agctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgact 374  Q
    ||||||||||| |||| |||||||||| |||  |||||||||||||| | || |||||||||||| ||| || || ||||||||||  || || |||| |    
T  39133891 agctgaaaaaataatttgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagctgagctcagacaggttcagttcgactcgaat 39133792  T
Q  375 catttccagcccta 388  Q
    ||||| ||||||||    
T  39133791 cattttcagcccta 39133778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 196 - 388
Target Start/End: Original strand, 33439191 - 33439382
Alignment:
Q  196 agttatatgatttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgt 295  Q
    |||||| || ||||| ||||  || ||||| ||| |||| ||| ||||||||| |||||| ||||||||||||||||  ||||||||||| | |||||||    
T  33439191 agttatgtgctttgaacaaacgaattgaacctaatgagccgaaccaaactgttcgtgaactttaaacgagtcgaacttgagctgaaaaaa-agttcgtgt 33439289  T
Q  296 cgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    | |||| ||    ||  |||| |||||| || |||||  ||||| || ||| || ||| |||||||||| || |||||||||||||| |||||    
T  33439290 caaactcgaaccaaggctcgaaccgagccaattcttaatgagtcgagtcgagctcagataggttcgattcgactcgactcatttccaacccta 33439382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 250 - 346
Target Start/End: Original strand, 39943734 - 39943830
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccga 346  Q
    |||||| |||||| || ||||||||||||||||||| | |||||||| |||| |||  ||||||||||| || | || |||||||||||| ||||||    
T  39943734 gtgaactttaaacaagccgaactcaagctgaaaaaaaagttcgtgtcaaactcgagccgagtttcgagctgaaccaattcttatcgagtcgagccga 39943830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 45714260 - 45714190
Alignment:
Q  231 gagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaact 301  Q
    |||||||| ||||||||| |||||| ||||||||||||||||  ||||||||||| | |||||||| ||||    
T  45714260 gagctgaaccaaactgttcgtgaactttaaacgagtcgaacttgagctgaaaaaaaagttcgtgtcaaact 45714190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 388
Target Start/End: Complemental strand, 45994957 - 45994791
Alignment:
Q  221 tgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccg 320  Q
    |||||| || |||| ||| ||||||||| |||||| ||||||||| ||||||  ||||||||||| | |||||||| ||||| | | ||| ||||| ||     
T  45994957 tgaactcaatgagccgaaccaaactgtttgtgaactttaaacgagccgaacttgagctgaaaaaa-agttcgtgtcaaacttaaatcgaggttcgaacca 45994859  T
Q  321 agcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||  || ||||| |||||  || |||||| |||||  ||||||| || ||||||| |||||| |||||    
T  45994858 agtcaattcttaacgagttgagtcgaacttagacaaattcgattcgactcgactcttttccaacccta 45994791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 41609374 - 41609314
Alignment:
Q  328 tcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||||||||||| |||||| || || |||||||| || || ||||||||||||||||||||    
T  41609374 tcttatcgagtcgagccgagctcaggcaggttcggttcgactcgactcatttccagcccta 41609314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 388
Target Start/End: Original strand, 27040593 - 27040684
Alignment:
Q  297 gaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| |||| |||||||||||||| | |||||||| |||||| ||  || || | ||| |||||| | || ||||||||||||||||||||    
T  27040593 gaactcgagtcgagtttcgagccgaaccaaatcttaacgagtcgagttgagctcaaacaagttcgactcgactcgactcatttccagcccta 27040684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 388
Target Start/End: Original strand, 54394106 - 54394181
Alignment:
Q  313 tcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| |||||| || ||||| |||||| ||  ||||| |||||||||||||| || |||||||||||||| |||||    
T  54394106 tcgaaccgagccaattcttaacgagtcgagttgaactcagacaggttcgattcgactcgactcatttccaacccta 54394181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 388
Target Start/End: Complemental strand, 33896060 - 33895916
Alignment:
Q  244 ctgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagc 343  Q
    ||||| |||||| ||||||||| |||| || |||| ||||||   ||||||||||||| |||| |||||| |||| || | |  |||||| ||||| ||     
T  33896060 ctgttcgtgaactttaaacgagccgaattcgagctaaaaaaaaggttcgtgtcgaactcgagtcgagtttggagctgaaccatttcttattgagtcgagt 33895961  T
Q  344 cgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||| || ||||| ||||| || || | ||||||||| || |||||    
T  33895960 cgagctcagacaagttcggttcgacttgactcattttcaacccta 33895916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 54432944 - 54433020
Alignment:
Q  313 tcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    ||||||||| | || |||||||||||| || ||| || |||||  ||||| | || |||||||||||||||||||||    
T  54432944 tcgagccgaaccaattcttatcgagtcgagtcgagctcagacatattcgacttgactcgactcatttccagccctac 54433020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 5e-85; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 388 - 566
Target Start/End: Original strand, 10564433 - 10564614
Alignment:
Q  388 acatgcagctaatgaatatgcagtgtaattatatactttttatacatgcttggtgctcaaatattctagcttaattgacggttgctcccattaatttttg 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10564433 acatgcagctaatgaatatgcagtgtaattatatactttttatacatgcttggtgctcaaatattctagcttaattgacggttgctcccattaatttttg 10564532  T
Q  488 gtcccgccagtaggttcctattaacatggtgtgtt---ttgtggttcaattgttatacacctcaatcacttgttcccctatg 566  Q
    |||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||    
T  10564533 gtcccgacagtaggttcctattaacatggtgtgttttgttgtggttcaattgttatacacctcaatcacttgttcacctatg 10564614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 218 - 385
Target Start/End: Complemental strand, 36418690 - 36418523
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||  ||||||| ||||||||||| ||||||||||||||| |||  ||||||||||    
T  36418690 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgaaccgaactcgagctgaaaaaataattcgtgtcgaactcgagccgagtttcgag 36418591  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcc 385  Q
    |||| | || |||||||||||| |||||| || || ||| ||||||| || |||||||||||||||||    
T  36418590 ccgaaccaattcttatcgagtcgagccgagctcaggcagattcgattcgactcgactcatttccagcc 36418523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 219 - 388
Target Start/End: Original strand, 48575707 - 48575876
Alignment:
Q  219 actgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagc 318  Q
    ||||||||||| |||  |||||||| ||||  ||||| |||||||||| |||||| ||||||||||||| ||||||| |||||||||| ||||||||||     
T  48575707 actgaacttaatgagtcgaatcaaattgttcatgaactttaaacgagttgaactcgagctgaaaaaagagttcgtgttgaacttgagtcgagtttcgagt 48575806  T
Q  319 cgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    | |  ||| |||||||||||| || ||| || ||||| |||||||| |||||||||||||| || |||||    
T  48575807 caaataaattcttatcgagtcgagtcgagctcagacatgttcgattcgattcgactcattttcaacccta 48575876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 250 - 388
Target Start/End: Original strand, 29678106 - 29678244
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| ||||||||| ||||||| || ||||||||   ||||| |||||||||||| |||||||||||||| | |  |||||||||||| || | | ||    
T  29678106 gtgaactttaaacgagccgaactcgagatgaaaaaaaggttcgtttcgaacttgagtcgagtttcgagccgaaccatttcttatcgagtcgagtcaagct 29678205  T
Q  350 aagacaggttcgattagattcgactcatttccagcccta 388  Q
     |||||||||||||| || ||||||||||||||||||||    
T  29678206 cagacaggttcgattcgactcgactcatttccagcccta 29678244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 242 - 389
Target Start/End: Original strand, 37441807 - 37441959
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagt--- 338  Q
    ||||||| |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||| |||  |||||||||||||| | || |||||||||||       
T  37441807 aactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcga 37441906  T
Q  339 --ccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
      | |||||| || || |||||||| || || |||||||||||||||||||||    
T  37441907 gccgagccgagctcaggcaggttcggttcgactcgactcatttccagccctac 37441959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 32179479 - 32179333
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||  ||||||||| ||||||| ||||||||||| | |||||||| ||||  ||  |||||||||||||| | || ||||||||| || |    
T  32179479 aactgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcgtgtcaaactcaagccgagtttcgagccgaaccaattcttatcgaatcga 32179380  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| || || || ||||| || || ||||||||||||||||||||    
T  32179379 gccgagctcaggcaagttcggttcgactcgactcatttccagcccta 32179333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 210 - 388
Target Start/End: Original strand, 45654329 - 45654507
Alignment:
Q  210 agcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttga 309  Q
    |||||| ||||||||| ||| |||| ||| | |||| ||  | ||| ||||||||||||||| | ||||||||||| ||||||||||||||| |||  ||    
T  45654329 agcaaacaaactgaacctaacgagccgaaccgaactattcataaactttaaacgagtcgaacccgagctgaaaaaataattcgtgtcgaactcgagccga 45654428  T
Q  310 gtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
     |||| ||| || | || |||||||||||| || ||| || || ||||||||| | || |||||||||||||| |||||    
T  45654429 atttcaagctgaaccaattcttatcgagtcgagtcgagctcaggcaggttcgactcgactcgactcatttccaacccta 45654507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 388
Target Start/End: Complemental strand, 40002457 - 40002320
Alignment:
Q  251 tgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaacta 350  Q
    ||||| ||||||||||||||||  ||||| ||||| | |||||||| |||||||   ||| ||||| |||||| || ||||| |||||| || |||| |     
T  40002457 tgaactttaaacgagtcgaacttgagctggaaaaaaagttcgtgtcaaacttgaaccgaggttcgaaccgagccaattcttaacgagtcgagtcgaattt 40002358  T
Q  351 agacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| ||||||||| || ||||||||||||||||||||    
T  40002357 agacgggttcgattcgactcgactcatttccagcccta 40002320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 203 - 388
Target Start/End: Original strand, 45582054 - 45582239
Alignment:
Q  203 tgatttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaactt 302  Q
    |||||||| ||||  |||||||||||| |||||||||  |||| || | |||| ||||||||  ||||||| ||||||||||| | | |||||||||||     
T  45582054 tgatttgaacaaatgaactgaacttaacgagctgaattgaactattcgcgaactttaaacgaaccgaactcgagctgaaaaaaaagtccgtgtcgaactc 45582153  T
Q  303 gagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
     |   ||||||||||| || | ||  ||||||||||| || ||| || | |||| ||||| | || ||||||||||||||||||||    
T  45582154 aaaccgagtttcgagctgaactaatccttatcgagtcgagtcgagctcatacagattcgactcgactcgactcatttccagcccta 45582239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 28005827 - 28005735
Alignment:
Q  296 cgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||||||| |||||||||||||| | || |||||||||||| || ||| || ||| |||||||| | || ||||||||||||||||||||    
T  28005827 cgaacttgagtcgagtttcgagccgaaccaattcttatcgagtcgagtcgagctcagagaggttcgactcgactcgactcatttccagcccta 28005735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 245 - 388
Target Start/End: Complemental strand, 24575443 - 24575300
Alignment:
Q  245 tgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagcc 344  Q
    |||| |||||| ||||||||| ||||||| || | |||||| | ||||| || |||| |||| |||||||||||||| | || ||||||||| || |  |    
T  24575443 tgttcgtgaactttaaacgagccgaactcgagttaaaaaaaaagttcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatcgattcaaatc 24575344  T
Q  345 gaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    || || |||||||||||| | || |||||||||||||| |||||    
T  24575343 gagctcagacaggttcgactcgactcgactcatttccaacccta 24575300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 47603464 - 47603549
Alignment:
Q  303 gagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| |||||||||||||| | || |||||||||||  ||||||||| || |||||||| || || ||||||||||||||||||||    
T  47603464 gagtcgagtttcgagccgaaccaattcttatcgagttgagccgaactcaggcaggttcggttcgactcgactcatttccagcccta 47603549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 7955787 - 7955649
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagct-gaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaac 348  Q
    |||||| ||||||||| ||||||| |||| ||||||||| ||||| ||||||| ||   |||||||||||||| | || |||||| ||||| || ||| |    
T  7955787 gtgaactttaaacgagccgaactcgagctagaaaaaaga-ttcgtttcgaactcgaaccgagtttcgagccgaaccaattcttattgagtcgagtcgagc 7955689  T
Q  349 taagacaggttcgattagattcgactcatttccagcccta 388  Q
    | |||||| ||||| | || |||||||||||||| |||||    
T  7955688 tcagacagattcgactcgactcgactcatttccaacccta 7955649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 389
Target Start/End: Original strand, 24470496 - 24470655
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| ||||||||||| | ||||| ||||||            |||||    
T  24470496 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtatcgaac------------tcgag 24470583  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    |||| | || |||||||||||  |||||| || || |||||||| || || |||||||||||||||||||||    
T  24470584 ccgaaccaattcttatcgagttgagccgagctcaggcaggttcggttcgactcgactcatttccagccctac 24470655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 385
Target Start/End: Complemental strand, 23916278 - 23916134
Alignment:
Q  240 caaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtc 339  Q
    ||||||||| ||| || ||||||||| ||||||  ||||| ||||| | ||| |||| |||| ||   ||| ||| | ||||||||| ||||| ||||||    
T  23916278 caaactgttcgtggactttaaacgagccgaacttgagctggaaaaa-agttcttgtcaaactcgaaccgagattcaaaccgagcaaattcttaacgagtc 23916180  T
Q  340 cagccgaactaagacaggttcgattagattcgactcatttccagcc 385  Q
     || ||| || |||||||||||||| || |||||||||||||||||    
T  23916179 gagtcgagcttagacaggttcgattcgactcgactcatttccagcc 23916134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 388
Target Start/End: Complemental strand, 42936651 - 42936495
Alignment:
Q  234 ctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaa--ttcgtgtcgaacttgagttgagtttcgagccgagcaaaatctt 331  Q
    ||||| ||||||||| |||||| ||||||||| ||||||| | || |||||| ||  || ||| | |||| ||  |||| |||||  ||||| || ||||    
T  42936651 ctgaaccaaactgttcgtgaactttaaacgagccgaactcgaacttaaaaaaaaaagtttgtgacaaactcgaactgaggttcgaatcgagccaattctt 42936552  T
Q  332 atcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    | |||||| ||  ||||| ||||| |||||||| || ||||||||||||||||||||    
T  42936551 aacgagtcgagttgaactcagacaagttcgattcgactcgactcatttccagcccta 42936495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 388
Target Start/End: Original strand, 5205151 - 5205250
Alignment:
Q  289 ttcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| || |||| |||| |||||||||||||| | || |||||| ||||| |  ||| || |||||||||||| | || ||||||||||||||||||||    
T  5205151 ttcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatggagtcgaatcgagctcagacaggttcgactcgactcgactcatttccagcccta 5205250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 388
Target Start/End: Complemental strand, 7595887 - 7595720
Alignment:
Q  221 tgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccg 320  Q
    ||||| ||| |||| ||| |||| |||  |||||| ||||||||| ||||||  ||||||||||| |  ||||||| |||| ||   ||| ||||| |||    
T  7595887 tgaacctaatgagccgaaccaaattgtccgtgaactttaaacgagccgaacttgagctgaaaaaaaagctcgtgtcaaactcgaaccgaggttcgaaccg 7595788  T
Q  321 agcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||| || ||||| |||||| ||  || || |||||| ||||||| |||| |||| |||||||||||||    
T  7595787 agctaattcttaacgagtcgagttgagctcagacagattcgattcgatttgacttatttccagcccta 7595720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 388
Target Start/End: Original strand, 38061637 - 38061759
Alignment:
Q  266 tcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgatta 365  Q
    |||||||| |||| ||||||   ||||  ||||||| |||| || ||| ||||||| | || |||||||||||| |  ||| || |||||||||||| |     
T  38061637 tcgaactcgagcttaaaaaaaggttcgcttcgaactcgagtcgaattttgagccgaaccaattcttatcgagtcgaatcgagctcagacaggttcgactc 38061736  T
Q  366 gattcgactcatttccagcccta 388  Q
    || ||||||||||||||||||||    
T  38061737 gactcgactcatttccagcccta 38061759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 389
Target Start/End: Original strand, 21681631 - 21681763
Alignment:
Q  257 ttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacag 356  Q
    |||||||||| |||| | ||||||||||| | ||||||||||||| |||  ||||||  ||| || | || |||||||||||| ||  || || || |||    
T  21681631 ttaaacgagttgaacccgagctgaaaaaatagttcgtgtcgaactcgagccgagttttaagctgaaccaattcttatcgagtcgagttgagctcaggcag 21681730  T
Q  357 gttcgattagattcgactcatttccagccctac 389  Q
    |||||| | || ||| |||||||||| ||||||    
T  21681731 gttcgactcgactcggctcatttccaaccctac 21681763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 387
Target Start/End: Complemental strand, 35309150 - 35309009
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| || ||| ||||| ||| ||||||| |||||||||||    |||||| ||||| ||   |||||||||||||| | || |||||||||||| |    
T  35309150 aactgttcgtaaactttaaatgagccgaactcgagctgaaaaaa----tcgtgtggaactcgaaccgagtttcgagccgaaccaattcttatcgagtcga 35309055  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagccct 387  Q
     |||| || ||  ||||||| || || || ||||||||||||||||    
T  35309054 accgagctcaggtaggttcggttcgactcaactcatttccagccct 35309009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 388
Target Start/End: Original strand, 46265581 - 46265746
Alignment:
Q  221 tgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccg 320  Q
    ||||| ||| |||| ||| ||||||||| |||||| ||||||||| ||||||  | || |||||||   ||||||| |||| || | ||| ||||| |||    
T  46265581 tgaacctaatgagccgaaccaaactgttcgtgaactttaaacgagccgaacttgaactaaaaaaagc--tcgtgtcaaactcgaatcgaggttcgaaccg 46265678  T
Q  321 agcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    | | || ||||| |||||| ||  || || | ||||||||||||  | ||||||||||||||||||||    
T  46265679 aactaattcttaacgagtcaagttgagcttaaacaggttcgattcaactcgactcatttccagcccta 46265746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 389
Target Start/End: Original strand, 43090034 - 43090168
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| ||||||||| ||||||| |||  ||||||   ||||| | ||||| |||| |||||||||||||| | || ||||     ||| |||||| ||    
T  43090034 gtgaactttaaacgagccgaactcgagcccaaaaaaatgttcgttttgaactcgagtcgagtttcgagccgaaccaattctt-----gtcgagccgagct 43090128  T
Q  350 aagacaggttcgattagattcgactcatttccagccctac 389  Q
     ||||| |||||| | || |||||||||||||||||||||    
T  43090129 cagacaagttcgactcgactcgactcatttccagccctac 43090168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 14579111 - 14579171
Alignment:
Q  328 tcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| |||||| || ||| || | |||||||||||| || ||||||||||||||||||||    
T  14579111 tcttaacgagtcgagtcgagctcatacaggttcgattcgactcgactcatttccagcccta 14579171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 7e-72; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 80018 - 79873
Alignment:
Q  15 atagtatttaaaattttacgtaagtggtttttagaccaattacaaggtttgtgagctgttttttgtgccctcataaaaaccatagttgtttttgtccctt 114  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80018 atagtatttaccattttacgtaagtggtttttagaccaattacaaggtttgtgagctgttttttgtgccctcataaaaaccatagttgtttttgtccctt 79919  T
Q  115 ggttcatttaatttgagtctagttaatttttatcgagtcgaatcga 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  79918 ggttcatttaatttgagtctagttaatttttatcgagtcgaatcga 79873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 79885 - 79759
Alignment:
Q  262 cgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcg 361  Q
    ||||||||| || ||||||||||||| ||||||||||||| |||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||    
T  79885 cgagtcgaa-tcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcgaaccgagcaaaatcttatcgagtcgagccgaacttagacaggttcg 79787  T
Q  362 attagattcgactcatttccagccctac 389  Q
    ||| ||||||||||||||||||||||||    
T  79786 attcgattcgactcatttccagccctac 79759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 43386680 - 43386534
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| |||||||||||||| || ||||||||||||| ||||||||||||| |||| ||||||| ||||||||||| |||||||||||| |    
T  43386680 aactgttcgtgaactttaaacgagtcgaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcaagccgagcaaattcttatcgagtcga 43386581  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    | ||| || ||||||||||  || || ||||||||||||||||||||    
T  43386580 gtcgagctcagacaggttcagttcgactcgactcatttccagcccta 43386534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 218 - 389
Target Start/End: Complemental strand, 9469597 - 9469427
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||||| ||||||| |||||| ||||||||  ||||||| ||||||||||| | ||||||||||||| |||  ||||||||||    
T  9469597 aactgaacctaacgagccgaatcgaactgttcgtgaactttaaacgatccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgag 9469498  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    |||| | || |||||||||||| |||||| || |||||||||||| | || |||||||||||||||||||||    
T  9469497 ccgaaccaattcttatcgagtcgagccgagctcagacaggttcga-tcgactcgactcatttccagccctac 9469427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 218 - 389
Target Start/End: Complemental strand, 19850302 - 19850131
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||| |||  ||||||||||    
T  19850302 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgag 19850203  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    |||| | ||   |||||||||| |||||| || ||||||||||| || || |||||||||||||||||||||    
T  19850202 ccgaaccaatgtttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccagccctac 19850131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 49820524 - 49820378
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||| |||| |||||||||||||| | || |||||||||||| |    
T  49820524 aactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcga 49820425  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| || || ||||||||||| || |||| |||||||||| ||||    
T  49820424 gccgagctcaggcaggttcgattcgactcgattcatttccagtccta 49820378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 221 - 388
Target Start/End: Complemental strand, 22183930 - 22183763
Alignment:
Q  221 tgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccg 320  Q
    ||||| ||| |||| ||| | ||||||| |||||| ||||||||||| || || ||||||||||||| ||||||||||||| |||| |||||| ||||||    
T  22183930 tgaacctaacgagcggaaccgaactgttcgtgaactttaaacgagtcaaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagttttgagccg 22183831  T
Q  321 agcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||||| ||||||| |||| | |||| || ||||||||||| || || |||| ||||||| |||||||    
T  22183830 agcaaattcttatcaagtcgatccgagctcagacaggttcggttcgactcgattcatttctagcccta 22183763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 218 - 381
Target Start/End: Complemental strand, 50605625 - 50605462
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| |||||| || ||||||| ||||||||||| | ||||||||||||| |||  ||||||||||    
T  50605625 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacaagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgag 50605526  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttcc 381  Q
    |||| | || |||||||||||| |||||| || ||||||||||| || || |||||||||||||    
T  50605525 ccgaaccaattcttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttcc 50605462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 21436453 - 21436307
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| ||||||||| ||||||| ||||||||||| | | ||||||||| | |||  ||||||||||||||   || |||||||||||| |    
T  21436453 aactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagtccgtgtcgaattcgagccgagtttcgagccgaatcaattcttatcgagtcga 21436354  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||||||| ||||||||||| || || |||||||||||||| |||||    
T  21436353 gccgaactcagacaggttcggttcgactcgactcatttccaacccta 21436307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 28266738 - 28266879
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| ||||||||||||||||| |||| |||||||| ||||||||||||| |||| ||||||||||||||||||| ||||||| |||| |    
T  28266738 aactgttcgtgaactttaaacgagtcgaactcgagctaaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccgagcaaattcttatccagtcga 28266837  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||     | ||||| |||| ||| || ||||||||||| ||||||||    
T  28266838 gc-----tcagacatgttcaattcgactcgactcattttcagcccta 28266879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 53369232 - 53369062
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||| ||| |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||| |||  ||||||||||    
T  53369232 aactgaacctaacgagccgaaccgaacagttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgag 53369133  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| | || |||||||||||  ||||||||| || ||| |||| || || |||||||||||||| |||||    
T  53369132 ccgaaccaattcttatcgagttgagccgaactcaggcagattcggttcgactcgactcatttccaacccta 53369062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 48977174 - 48977004
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| |||| |||| |||||  ||||||||| ||||||| ||||||||||| | ||||||||||||| |||  ||||||||||    
T  48977174 aactgaacctaacgagccgaaccaaattgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgag 48977075  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| | || ||||||||| || ||||||  | || ||| |||| || || ||||||||||||||||||||    
T  48977074 ccgaaccaattcttatcgaatcgagccgagttcaggcagattcggttcgactcgactcatttccagcccta 48977004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 52813145 - 52813048
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtc 339  Q
    ||||||| |||||| ||||||||| |||| || ||||||||||||| ||||||||||||| |||| ||||||| ||||||||||| ||||||||||||    
T  52813145 aactgttcgtgaactttaaacgaggcgaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcaagccgagcaaattcttatcgagtc 52813048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 250 - 362
Target Start/End: Original strand, 51409116 - 51409228
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| ||||||||||||||||| |||| |||||| | ||||||||||||| || | |||||||||||||| |||| |||||||||||| || ||| ||    
T  51409116 gtgaactttaaacgagtcgaactcgagctaaaaaaatagttcgtgtcgaactcgaatcgagtttcgagccgaacaaattcttatcgagtcgagtcgagct 51409215  T
Q  350 aagacaggttcga 362  Q
     ||||| ||||||    
T  51409216 cagacaagttcga 51409228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 388
Target Start/End: Original strand, 55892687 - 55892811
Alignment:
Q  257 ttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacag 356  Q
    ||||||||||||||||| |||| |||||| | ||||||||||||| ||||       ||||||||||||| |||||||||||| || ||| || ||| ||    
T  55892687 ttaaacgagtcgaactcgagctaaaaaaatagttcgtgtcgaactcgagt-------cgagccgagcaaattcttatcgagtcgagtcgagctcagatag 55892779  T
Q  357 gttcgattagattcgactcatttccagcccta 388  Q
     ||||||| || ||||||||||||||||||||    
T  55892780 attcgattcgactcgactcatttccagcccta 55892811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 388
Target Start/End: Original strand, 4275544 - 4275682
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| ||||||||||||||| ||||||||||||| | || |||||||||| |||  ||||||||||| || | || |||||||||||| || ||| ||    
T  4275544 gtgaactttaaacgagtcgaacccaagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgagctgaaccaattcttatcgagtcgagtcgagct 4275643  T
Q  350 aagacaggttcgattagattcgactcatttccagcccta 388  Q
     || ||| ||||| | || ||| |||||||||| |||||    
T  4275644 caggcagattcgactcgactcggctcatttccaacccta 4275682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 52813052 - 52812966
Alignment:
Q  303 gagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    |||| ||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||| || || |||||||||||  ||||||||    
T  52813052 gagtcgagtttcaagccgagcaaattcttatcgagtcgagccgaactcagacaggttcggttcgactcgactcatttttagccctac 52812966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 218 - 388
Target Start/End: Original strand, 44792763 - 44792921
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||            |||||    
T  44792763 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaac------------tcgag 44792850  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| | || |||||||||||| |||||| || | ||||||||| || || ||||||||||||||||||||    
T  44792851 ccgaaccaattcttatcgagtcgagccgagctcatacaggttcggttcgactcgactcatttccagcccta 44792921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 36543475 - 36543359
Alignment:
Q  207 ttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagt 306  Q
    |||||||||  |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| ||||||||||| | || |||||||||| |||     
T  36543475 ttgagcaaacgaactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagtttgtgtcgaactcgagc 36543376  T
Q  307 tgagtttcgagccgagc 323  Q
     |||||||||| |||||    
T  36543375 cgagtttcgagtcgagc 36543359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 54742233 - 54742089
Alignment:
Q  240 caaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaa--ttcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgag 337  Q
    ||||||||| |||||| ||||||||  ||||||| ||||||||||| ||  |||||||  |||| || ||||| ||||  |||||| || ||||| ||||    
T  54742233 caaactgttcgtgaactttaaacgaaccgaactcgagctgaaaaaaaaaaattcgtgttaaactcgaattgaggttcggaccgagccaattcttaacgag 54742134  T
Q  338 tccagccgaactaagacaggttcgattagattcgactcatttcca 382  Q
    || || ||| || ||||||||| |||| || ||||||||||||||    
T  54742133 tcaagtcgagctcagacaggtttgattcgaatcgactcatttcca 54742089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 242 - 391
Target Start/End: Original strand, 12790152 - 12790289
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| ||||||||| ||||||| || |||||||| | |||||||||||||            |||||||||| || ||||||||| || |    
T  12790152 aactgttcgtgaactttaaacgagccgaactcgagttgaaaaaatagttcgtgtcgaact------------cgagccgagccaattcttatcgaatcga 12790239  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagccctacat 391  Q
    ||||| || ||||||||||| || || ||||||||||| |||||||||||    
T  12790240 gccgagctcagacaggttcggttcgactcgactcattttcagccctacat 12790289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 196 - 304
Target Start/End: Original strand, 36156858 - 36156966
Alignment:
Q  196 agttatatgatttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgt 295  Q
    |||||| || ||||| ||||  || ||||| ||| |||| ||| ||||||||| |||||| ||||||||||||||||  ||||||||||| | |||||||    
T  36156858 agttatgtgctttgaacaaacgaattgaacctaatgagccgaaccaaactgttcgtgaactttaaacgagtcgaacttgagctgaaaaaaaagttcgtgt 36156957  T
Q  296 cgaacttga 304  Q
    | |||||||    
T  36156958 caaacttga 36156966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 52705673 - 52705593
Alignment:
Q  308 gagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||||||||||||| | || |||||||||||| |||||| || ||||| |||||| | || ||||||||||||||||||||    
T  52705673 gagtttcgagccgaaccaattcttatcgagtcgagccgagctcagacaagttcgactcgactcgactcatttccagcccta 52705593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 7505509 - 7505426
Alignment:
Q  303 gagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccc 386  Q
    |||| ||||||||||||||   || |||||||||||| |||||| || ||||| |||||| | || ||||||||||||||||||    
T  7505509 gagtcgagtttcgagccgaatcaattcttatcgagtcgagccgagctcagacaagttcgactcgactcgactcatttccagccc 7505426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 45674462 - 45674379
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaact 301  Q
    |||||||| ||| |||| ||| | |||| || |||||| ||||||||| ||||||| ||||||||||| | |||||||||||||    
T  45674462 aactgaacctaacgagccgaaccgaactattcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaact 45674379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 25134011 - 25133933
Alignment:
Q  310 gtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||||||||||| | || |||||||||||| || ||| || |||||| ||||| | || ||||||||||||||||||||    
T  25134011 gtttcgagccgaaccaattcttatcgagtcgagtcgagctcagacagattcgactcgactcgactcatttccagcccta 25133933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 388
Target Start/End: Complemental strand, 51994176 - 51994083
Alignment:
Q  295 tcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||| |||| ||||||||||| || | || ||||| |||||| || ||| || |||| | ||||||| || ||||||||||||||||||||    
T  51994176 tcgaactcgagtcgagtttcgagctgaaccaattcttaacgagtcgagtcgagctcagacggattcgattcgactcgactcatttccagcccta 51994083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 6874924 - 6874988
Alignment:
Q  221 tgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaa 285  Q
    |||||| || |||| ||| ||||||||| |||||| |||| |||||||||||| |||||||||||    
T  6874924 tgaactcaatgagccgaaccaaactgtttgtgaactttaagcgagtcgaactcgagctgaaaaaa 6874988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 40797232 - 40797152
Alignment:
Q  310 gtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctaca 390  Q
    |||||||||||| | || |||||||||||| || ||| || |||||| ||||| | || |||||||||||||| |||||||    
T  40797232 gtttcgagccgaaccaattcttatcgagtcgagtcgagctcagacagattcgactcgactcgactcatttccacccctaca 40797152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 18990246 - 18990191
Alignment:
Q  334 cgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    |||||| || |||||| | |||||||||||  ||||||||||||||||||||||||    
T  18990246 cgagtcgagtcgaactcaaacaggttcgatctgattcgactcatttccagccctac 18990191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 16743116 - 16743210
Alignment:
Q  245 tgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtc 339  Q
    |||| |||||| |||| | ||||||||||||| | ||||||   |||||  | ||||||||| |||||||||||||| | || ||||||||||||    
T  16743116 tgttcgtgaactttaatcaagtcgaactcaagttaaaaaaatggttcgtaacaaacttgagtcgagtttcgagccgaaccaattcttatcgagtc 16743210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 48340238 - 48340300
Alignment:
Q  240 caaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaa-ttcgtgtcgaact 301  Q
    ||||||||| |||||| |||||||||||||||| ||||| |||||| || |||||||| ||||    
T  48340238 caaactgtttgtgaactttaaacgagtcgaacttaagctcaaaaaaaaagttcgtgtcaaact 48340300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 49378170 - 49378232
Alignment:
Q  326 aatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||||||| || |||||| || ||||||||||| || || ||||||||||||| ||||||    
T  49378170 aatcttatcgattcgagccgagctcagacaggttcggttcgactcgactcatttccggcccta 49378232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 385
Target Start/End: Complemental strand, 22720824 - 22720747
Alignment:
Q  308 gagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcc 385  Q
    |||||||||||||| | || |||||||||||  |||||| || ||||  |||||||| || |||| ||||||||||||    
T  22720824 gagtttcgagccgaaccaattcttatcgagttgagccgagctcagactagttcgattcgactcgattcatttccagcc 22720747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 221 - 391
Target Start/End: Complemental strand, 472993 - 472823
Alignment:
Q  221 tgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccg 320  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| | | |    
T  472993 tgaacttaacgagctgaatcaaactgttcgtgaactttaaacgagtcgaactcgagctgaaaaaagagttcgtgtcgaacttgagtcgagtttcaaactg 472894  T
Q  321 agcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctacat 391  Q
    |||||| ||||||| |||| || ||| || | |||  || |||| || ||||||||||| || ||||||||    
T  472893 agcaaattcttatcaagtcgagtcgagctcatacatatttgattcgactcgactcatttacatccctacat 472823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 207 - 396
Target Start/End: Complemental strand, 18962026 - 18961837
Alignment:
Q  207 ttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagt 306  Q
    ||||||||  ||||||||| ||  |||| ||| | ||||||| |||||| |||||||||||||||||  |||||||||| | || |||||||||| |||     
T  18962026 ttgagcaaccaaactgaacctagcgagccgaaccgaactgttcgtgaactttaaacgagtcgaactcgggctgaaaaaatagtttgtgtcgaactcgagc 18961927  T
Q  307 tgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctacatgcagc 396  Q
     |||||||||||||| | || |||||||||||| |||||| || || ||||||||||| || |||||||||||||||| |||| ||||||    
T  18961926 cgagtttcgagccgaaccaattcttatcgagtcgagccgagctcaggcaggttcgatttgactcgactcatttccagcactacttgcagc 18961837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 218 - 389
Target Start/End: Complemental strand, 10346382 - 10346211
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||| |||  ||||||||||    
T  10346382 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgag 10346283  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    |||| | || ||||||||| || |||||| || | ||||||||| || || | |||||||||| ||||||||    
T  10346282 ccgaaccaattcttatcgaatcgagccgagctcaaacaggttcggttcgacttgactcatttctagccctac 10346211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 7957200 - 7957054
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| |||||||||  |||||| ||||||||||| | ||||||| ||||| |||  |||||||||||||| | || |||||||||||| |    
T  7957200 aactgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtgttgaactcgagccgagtttcgagccgaaccaattcttatcgagtcga 7957101  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| || |||||||||||  | || ||||||||||||||||||||    
T  7957100 gccgagctcagacaggttcgggtcgactcgactcatttccagcccta 7957054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 196 - 339
Target Start/End: Original strand, 25181113 - 25181256
Alignment:
Q  196 agttatatgatttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgt 295  Q
    |||||| ||||||||| |||  || ||||  ||| |||| ||||| ||||||| |||||  ||||||||||||||||| |||| |||||||| |||||||    
T  25181113 agttatgtgatttgagaaaatgaattgaaactaacgagccgaatcgaactgtttgtgaattttaaacgagtcgaactcgagcttaaaaaagagttcgtgt 25181212  T
Q  296 cgaacttgagttgagtttcgagccgagcaaaatcttatcgagtc 339  Q
    ||||||  || |||||||||||| ||||||| ||||| ||||||    
T  25181213 cgaactcaagctgagtttcgagctgagcaaattcttaacgagtc 25181256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 388
Target Start/End: Complemental strand, 6998670 - 6998576
Alignment:
Q  294 gtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||||||| |||| ||||||||||||||||||| |||||||||||| |||||| || ||||||||||| || || ||||||||||||||| ||||    
T  6998670 gtcgaactcgagtcgagtttcgagccgagcaaattcttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccagtccta 6998576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 205 - 388
Target Start/End: Complemental strand, 7436882 - 7436700
Alignment:
Q  205 atttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttga 304  Q
    |||||||||||  |  ||||| ||| |||||||| |||  || | |||||| ||||||||| ||||||| || |||||||||  ||||| || |||| ||    
T  7436882 atttgagcaaacgagttgaacctaacgagctgaaccaagttgctcgtgaactttaaacgagccgaactcgagttgaaaaaag-gttcgtttcaaactcga 7436784  T
Q  305 gttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    || |||||||||||||| | |  |||||||||||| || ||| || |||||||||||||| || |||||| |||| ||||||||    
T  7436783 gtggagtttcgagccgaaccatttcttatcgagtcgagtcgagctcagacaggttcgattcgactcgacttattttcagcccta 7436700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 294 - 389
Target Start/End: Original strand, 4442041 - 4442136
Alignment:
Q  294 gtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    ||||||||||||||||||||||||||||   || |||||||||||| ||  || || ||||||||||| || || ||||||||||||||| |||||    
T  4442041 gtcgaacttgagttgagtttcgagccgaattaattcttatcgagtcgagttgagctcagacaggttcggttcgactcgactcatttccagacctac 4442136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 301
Target Start/End: Original strand, 10962370 - 10962475
Alignment:
Q  196 agttatatgatttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgt 295  Q
    |||||| || ||||| ||||  || ||||| ||| |||| ||| ||||||||| |||||| ||||||||| |||||| |||||||||||| | |||||||    
T  10962370 agttatgtgctttgaacaaacgaattgaacctaatgagccgaaccaaactgttcgtgaactttaaacgagccgaacttaagctgaaaaaaaagttcgtgt 10962469  T
Q  296 cgaact 301  Q
    | ||||    
T  10962470 caaact 10962475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 12428189 - 12428092
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtc 339  Q
    ||||||| || ||| ||||||||||||||||| |||| || ||| | ||||| ||||||| |||| ||||||||||||||   || ||||||||||||    
T  12428189 aactgttcgtaaactttaaacgagtcgaactcgagcttaacaaaaagttcgtatcgaactcgagtcgagtttcgagccgaatcaattcttatcgagtc 12428092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 375
Target Start/End: Complemental strand, 33109969 - 33109845
Alignment:
Q  251 tgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaacta 350  Q
    ||||| ||||||||| ||||||| |||  ||||||   ||||| | ||||| |||| |||||||||||||| | || |||||||||||| |||||| ||     
T  33109969 tgaactttaaacgagccgaactcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagccgagctc 33109870  T
Q  351 agacaggttcgattagattcgactc 375  Q
    ||||| |||||| | || |||||||    
T  33109869 agacaagttcgactcgactcgactc 33109845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 387
Target Start/End: Original strand, 9951363 - 9951529
Alignment:
Q  221 tgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccg 320  Q
    ||||||||| ||| |||| ||||||||| |||||| ||||| ||  ||||||  ||| | ||||| | |||||||| |||| || |  || || || |||    
T  9951363 tgaacttaatgagttgaaccaaactgttcgtgaactttaaatgaaccgaacttgagcagtaaaaaaagttcgtgtcaaactcgaatcaaggtttgaaccg 9951462  T
Q  321 agcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccct 387  Q
    ||| || |||||  ||||| || |||||| ||||| |||||||| || | |||||||||||||||||    
T  9951463 agccaattcttaatgagtcaagtcgaacttagacaagttcgattcgacttgactcatttccagccct 9951529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 8291463 - 8291513
Alignment:
Q  296 cgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccga 346  Q
    |||| ||||||||||||||||||||| | |||| |||||||||| ||||||    
T  8291463 cgaatttgagttgagtttcgagccgaactaaattttatcgagtcgagccga 8291513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 362
Target Start/End: Complemental strand, 22295487 - 22295382
Alignment:
Q  257 ttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacag 356  Q
    ||||| ||| ||||||| ||| | ||||| | || || ||||||| |||| |||||||||||||| | || ||| |||||||  |||||| ||||||||     
T  22295487 ttaaatgagccgaactcgagccggaaaaaaagtttgtttcgaactcgagtcgagtttcgagccgaaccaattctaatcgagttgagccgagctaagacaa 22295388  T
Q  357 gttcga 362  Q
    ||||||    
T  22295387 gttcga 22295382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 219 - 389
Target Start/End: Complemental strand, 20986233 - 20986063
Alignment:
Q  219 actgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagc 318  Q
    ||||||||||| |||| |||   ||||||| |||||| ||||||||| ||||||| ||||||||||| | |||||||||||||  ||  |||||||||||    
T  20986233 actgaacttaacgagccgaacagaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcaagccgagtttcgagc 20986134  T
Q  319 cgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccctac 389  Q
    ||| | || |||||||||||| |||||| || ||||||||||| || || ||||||||||||||| |||||    
T  20986133 cgaaccaattcttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccagtcctac 20986063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 36538247 - 36538077
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| | ||||| ||||||||||| | ||||||||||||| |||  ||||||||||    
T  36538247 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccaaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgag 36538148  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| | || |||||||||||| |||||| || ||||||||||  || || ||||||||||||||||||||    
T  36538147 ccgaaccaattcttatcgagtcgagccgagctcagacaggttcagttcgactcgactcatttccagcccta 36538077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 44741290 - 44741436
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| |||||| |||||||||||||| |  ||||||||||||| ||||||||||||| |||| ||||||||||||||||||| ||||||| |||| |    
T  44741290 aactgttcgtgaactttaaacgagtcgaatttgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccgagcaaattcttatcaagtcga 44741389  T
Q  342 gccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||| || ||||||||||| ||  | || ||||||||||| |||||    
T  44741390 gccgagctcagacaggttcggttcaactcaactcatttccaacccta 44741436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 207 - 388
Target Start/End: Complemental strand, 27633323 - 27633142
Alignment:
Q  207 ttgagcaaagaaactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagt 306  Q
    ||||||||  ||||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| ||||||||||| | || |||| |||||||||     
T  27633323 ttgagcaaccaaactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagtttgtgttgaacttgagc 27633224  T
Q  307 tgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
     |||||||||||||| | || ||||||| |||| |||||| || || |||||||| || || ||||||||||||||||||||    
T  27633223 cgagtttcgagccgaaccaattcttatcaagtcgagccgagctcaggcaggttcggttcgactcgactcatttccagcccta 27633142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 218 - 360
Target Start/End: Complemental strand, 12139536 - 12139394
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||||||| |||||||| | ||| ||| |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||| |||  ||||||||||    
T  12139536 aactgaacttaacgagctgaaccgaacagttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgag 12139437  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttc 360  Q
    |||| | || |||||||||||| | |||| || ||||||||||    
T  12139436 ccgaaccaattcttatcgagtcgaaccgagctcagacaggttc 12139394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 339
Target Start/End: Complemental strand, 41958717 - 41958596
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||| |||  ||||||||||    
T  41958717 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgag 41958618  T
Q  318 ccgagcaaaatcttatcgagtc 339  Q
    |||| | || | ||||||||||    
T  41958617 ccgaaccaatttttatcgagtc 41958596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 218 - 385
Target Start/End: Complemental strand, 26435937 - 26435770
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | || |||| |||||| |||||| |||||||||| || |||||||| | ||||||||||||| ||   |||||||||     
T  26435937 aactgaacctaacgagccgaaccgaattgttcgtgaactttaaacaagtcgaactcgagttgaaaaaatatttcgtgtcgaactcgaaccgagtttcgaa 26435838  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcc 385  Q
    |||| | || ||||||||| || |||||| || |||||| |||| || || ||||||||||| |||||    
T  26435837 ccgaaccaattcttatcgaatcgagccgagctcagacagattcggttcgactcgactcattttcagcc 26435770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 240 - 388
Target Start/End: Complemental strand, 11027435 - 11027287
Alignment:
Q  240 caaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtc 339  Q
    ||||||||| |||||| ||||||||| ||||||  || || ||||| | |||||||| |||| ||   ||| ||||| |||| |||| |||||  ||||     
T  11027435 caaactgttcgtgaactttaaacgagccgaacttgagttggaaaaaaagttcgtgtcaaactcgatccgaggttcgaaccgaacaaattcttaatgagtt 11027336  T
Q  340 cagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
     || |||||| ||||| |||||||| || ||||||||||||||||||||    
T  11027335 gagtcgaactcagacaagttcgattcgactcgactcatttccagcccta 11027287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 39801267 - 39801163
Alignment:
Q  242 aactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtcca 341  Q
    ||||||| ||||| ||||||||||  |||||| ||||||||||||| ||||||||||||| |||  || |||||||| || | || |||| ||||||| |    
T  39801267 aactgtttgtgaatcttaaacgagctgaactcgagctgaaaaaagagttcgtgtcgaactcgagccgaatttcgagctgaactaattcttctcgagtcga 39801168  T
Q  342 gccga 346  Q
    |||||    
T  39801167 gccga 39801163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 388
Target Start/End: Complemental strand, 33831046 - 33830890
Alignment:
Q  220 ctgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagcc 319  Q
    |||||| ||| |||| ||| | || |||| |||||| ||||||||| ||||||| ||||||||||| | |||||||||||||            ||||||    
T  33831046 ctgaacctaacgagccgaaccgaattgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaact------------cgagcc 33830959  T
Q  320 gagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    || | || |||||||||||| |||||| || ||||||||||| || || |||||||||||||| |||||    
T  33830958 gaaccaattcttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccaacccta 33830890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 250 - 388
Target Start/End: Original strand, 2647602 - 2647740
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaact 349  Q
    |||||| ||||||||| ||||||| |||  ||||||   || || | ||||| |||| |||||||||||||| | || |||||||||||| ||||||  |    
T  2647602 gtgaactttaaacgagccgaactcgagcccaaaaaaaggttggttttgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagccgagtt 2647701  T
Q  350 aagacaggttcgattagattcgactcatttccagcccta 388  Q
     |||||  ||||| | || ||||||||||||||||||||    
T  2647702 cagacaaattcgactcgactcgactcatttccagcccta 2647740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 33164534 - 33164617
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaact 301  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||  ||||||||||| | |||||||||||||    
T  33164534 aactgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactggagctgaaaaaatagttcgtgtcgaact 33164617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 3409851 - 3409939
Alignment:
Q  250 gtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagt 338  Q
    |||||| ||||||||| ||||||| || | ||||||   ||||| ||||||| |||| ||||||| |||||||| || |||||||||||    
T  3409851 gtgaactttaaacgagccgaactcgagttaaaaaaaaggttcgtatcgaactcgagtcgagtttcaagccgagctaattcttatcgagt 3409939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 1093969 - 1093914
Alignment:
Q  333 tcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    ||||||| || |||||| |||||||||||| | || ||||||||||||||||||||    
T  1093969 tcgagtcgagtcgaactcagacaggttcgactcgactcgactcatttccagcccta 1093914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 30711608 - 30711538
Alignment:
Q  231 gagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaact 301  Q
    |||| ||| ||||||||| |||||| ||||||||| ||||||  ||||||||||| | |||||||| ||||    
T  30711608 gagccgaaccaaactgttcgtgaactttaaacgagccgaacttgagctgaaaaaaaagttcgtgtcaaact 30711538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 33475774 - 33475711
Alignment:
Q  236 gaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaact 301  Q
    ||||||||||||| || ||| ||||||||| ||||||| ||||||||||  |||||||||| ||||    
T  33475774 gaatcaaactgttcgtaaactttaaacgagccgaactcgagctgaaaaa--aattcgtgtcaaact 33475711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 38410211 - 38410275
Alignment:
Q  221 tgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaa 285  Q
    ||||| ||| |||| ||| ||||||||| |||||| ||||||||| | ||||| |||||||||||    
T  38410211 tgaacctaatgagccgaaccaaactgttcgtgaactttaaacgagcctaactcgagctgaaaaaa 38410275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 18880 - 18710
Alignment:
Q  218 aactgaacttaaggagctgaatcaaactgttagtgaaccttaaacgagtcgaactcaagctgaaaaaagaattcgtgtcgaacttgagttgagtttcgag 317  Q
    |||||||| ||| |||| ||| | ||||||| |||||| ||||||||| ||||||| ||||||||||| | ||||||||||||| ||   |||||| |||    
T  18880 aactgaacctaatgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgaaccgagttttgag 18781  T
Q  318 ccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| | || |||||||||||| |||||| || | |||| |||| || || ||||||||||||||||||||    
T  18780 ccgaaccaattcttatcgagtcgagccgagctcaaacagattcggttcgactcgactcatttccagcccta 18710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 275 - 389
Target Start/End: Original strand, 6420 - 6534
Alignment:
Q  275 agctgaaaaaagaattcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgact 374  Q
    ||||||||||| | ||||||||||||| |||  ||||||| | |||| | || |||||||||||| || ||| || || ||||||| ||| || ||||||    
T  6420 agctgaaaaaatagttcgtgtcgaactcgagccgagtttcaacccgaaccaattcttatcgagtcgagtcgagctcaggcaggttcaattcgactcgact 6519  T
Q  375 catttccagccctac 389  Q
    ||||| |||||||||    
T  6520 cattttcagccctac 6534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 16582 - 16492
Alignment:
Q  298 aacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagcccta 388  Q
    |||| |||| |||||||||||||| || | | || | ||||  || ||| || |||||||||||||| || ||||||||||||||||||||    
T  16582 aactcgagtcgagtttcgagccgaacatatttttgttgagttgagtcgagctcagacaggttcgattcgactcgactcatttccagcccta 16492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 386
Target Start/End: Complemental strand, 26592 - 26495
Alignment:
Q  289 ttcgtgtcgaacttgagttgagtttcgagccgagcaaaatcttatcgagtccagccgaactaagacaggttcgattagattcgactcatttccagccc 386  Q
    ||||| ||||||| |||| || |||||||| || | || |||||||||||| || ||| || | ||||||||||||  | |||||| |||||||||||    
T  26592 ttcgtttcgaactcgagtcgaatttcgagctgaaccaattcttatcgagtcgagtcgagctcaaacaggttcgattcaactcgactgatttccagccc 26495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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