View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_46 (Length: 208)
Name: NF16809_low_46
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 30757775 - 30757952
Alignment:
| Q |
15 |
aattctagaagccattcataagctactcccaatttaaatgcaaagccgtctctttcaaccattatttcatcaaagatacggagggaaaaatcaacatcaa |
114 |
Q |
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| T |
30757775 |
aattctagaagccattcataagctactcccaatttaaatgcaaagccatctctttcaaccattatttcatcaaagatatggagggaaaaatcaacatcaa |
30757874 |
T |
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| Q |
115 |
ataagacacgagcataattacgaaacacatgttgttttgtagcattatcaatattcaaacgagtcacaatcacacctg |
192 |
Q |
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| T |
30757875 |
ctaagacacgagcataattacgaaacacatgttgttttgtagcattatcaatattcaaacgagtcacaatcacacctg |
30757952 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 2178610 - 2178544
Alignment:
| Q |
69 |
tcaaccattatttcatcaaagatacggagggaaaaatcaacatcaaataagacacgagcataattac |
135 |
Q |
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| T |
2178610 |
tcaaccataatttcatcaaatatacggtgtgaaaaatcaatgtcaactaaaacacgagcataattac |
2178544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 20600479 - 20600549
Alignment:
| Q |
43 |
ccaatttaaatgcaaagccgtctctttcaaccattatttcatcaaagatacggagggaaaaatcaacatca |
113 |
Q |
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| T |
20600479 |
ccaatttgaaagcgaagacgtctctttcaaccattatttcatcaaatatacggtaagaaaaatcaatatca |
20600549 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 19737038 - 19736927
Alignment:
| Q |
24 |
agccattcataagctactcccaatttaaatgcaaagccgtctctttcaaccattatttcatcaaagatacggagggaaaaatcaacatcaaataagacac |
123 |
Q |
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| T |
19737038 |
agccattcgtaaaccacttccaatttaaaagtgaagtcgtctctttcaaccattattccatcaagtatacagcgagaaaaatcaatatcaaccaaaatgc |
19736939 |
T |
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| Q |
124 |
gagcataattac |
135 |
Q |
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| T |
19736938 |
gagcataattac |
19736927 |
T |
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