View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_48 (Length: 206)
Name: NF16809_low_48
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 10396429 - 10396600
Alignment:
| Q |
18 |
gaatgtggtatcttcactttatggaccctattgaacatgtttctctttatttctaccttgtattttcatcttcatatcctccttttatattttcaatcga |
117 |
Q |
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| T |
10396429 |
gaatgtggtatcttcacttgatggaccctattga-catgtttctctttatttctacgttgtattttcatcttcatatcctccttttatattttcaatcga |
10396527 |
T |
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| Q |
118 |
tattgagacctctttttataactgttcaagtaattaacttagctaaccatgcacttcctgcgatagtacttcc |
190 |
Q |
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| T |
10396528 |
tattgagacctctttttataactgttcaagtaattaacttagctaaccatgcacttcctgcgatggtacttcc |
10396600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 8913402 - 8913512
Alignment:
| Q |
18 |
gaatgtggtatcttcactttatggaccctattgaacatgtttctctttatttctaccttgtattttcatcttcatatcctccttttatattttcaatcga |
117 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||| |||||| | |||| |||| |||||||||||||||||||||||||||| |||| |
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| T |
8913402 |
gaatgtggtatcttcacttggtggaccctatcgaacatgtttctctctatttcaatgttgtgtttttatcttcatatcctccttttatattttcagtcga |
8913501 |
T |
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| Q |
118 |
tattgagacct |
128 |
Q |
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| T |
8913502 |
tattgagacct |
8913512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 48069146 - 48069223
Alignment:
| Q |
56 |
gtttctctttatttctaccttgtattttcatcttcatatcctccttttatattttcaatcgatattgagacctctttt |
133 |
Q |
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|||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
48069146 |
gtttctctctatttctatattgggttttcatcttcatatcatccttttatattttcaatcgttattgagacctctttt |
48069223 |
T |
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