View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16809_low_6 (Length: 504)
Name: NF16809_low_6
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16809_low_6 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: scaffold0267 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 23170 - 22682
Alignment:
| Q |
1 |
ttcattagactctgaacgaagctcataaaaaaccacccaactaggcctctgggaaaatacaagcaaggaacaagatggatgtagttgaacatgtttctcc |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23170 |
ttcattagactctgaactaagctcataaaaaaccacccaactaggcctctgggaaaatacaagcaaggaacaagatggatgtagttgaacatgtttctcc |
23071 |
T |
|
| Q |
101 |
gtttgagctactatgtaaccaagttgattgcgtccagagtacatggctacattttcagaaagtgaggacagtatagcctttttcatgttctcatcgtgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23070 |
gtttgagctactatgtaaccaagttgattgcgtccagagtacatggctacattttcagaaagtgaggacagtatagcctttttcatgttcttatcgtgaa |
22971 |
T |
|
| Q |
201 |
tagaagggttatgagggtcccaacgccagtaacttggaacaacaaggccaagttcacgcactaggaaagattcaacctccaaaaatgggtggtggaatct |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| ||||||| | ||||||||||| || ||| |||| |
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| T |
22970 |
tagaagggttatgagggtcccagcgccagtaacttggaacaacaaggccaagttcactctctaggcaagattctaactccaaaaatgtgttttggcatct |
22871 |
T |
|
| Q |
301 |
cctaatagaattggcattgatgctgatttcagaacaccaattattcttccaattttgaggctggacttcccattccatgtacacagagagaagagtaaaa |
400 |
Q |
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||| ||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22870 |
cctcatagatttggcattgatgctgttttcccaacaccatttattcttccaattttgaggctggacttcccattccatgtacacagagagaagagtaaaa |
22771 |
T |
|
| Q |
401 |
aggtcaccctcgcaatggcaaaattgcactttctgacaatcagatttttgcttatcatcttcattaccaactctgcaaaatacgcttct |
489 |
Q |
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| T |
22770 |
aggtcaccctcgcaatggcaaaattgcactttctgacaatcagatttttgcttatcatcttcattaccaactctgcaaaatacgcttct |
22682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 3879258 - 3878770
Alignment:
| Q |
1 |
ttcattagactctgaacgaagctcataaaaaaccacccaactaggcctctgggaaaatacaagcaaggaacaagatggatgtagttgaacatgtttctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879258 |
ttcattagactctgaacgaagctcataaaaaaccacccaactaggcctctgggaaaatacaagcaaggaacaagatggatgtagttgaacatgtttctcc |
3879159 |
T |
|
| Q |
101 |
gtttgagctactatgtaaccaagttgattgcgtccagagtacatggctacattttcagaaagtgaggacagtatagcctttttcatgttctcatcgtgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3879158 |
gtttgagctactatgtaaccaagttgattgcgtccagagtacatggctacattttcagaaagtgaggacagtatagcctttttcatgttcttatcgtgaa |
3879059 |
T |
|
| Q |
201 |
tagaagggttatgagggtcccaacgccagtaacttggaacaacaaggccaagttcacgcactaggaaagattcaacctccaaaaatgggtggtggaatct |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| ||||||| | ||||||||||| || ||| |||| |
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| T |
3879058 |
tagaagggttatgagggtcccagcgccagtaacttggaacaacaaggccaagttcactctctaggcaagattctaactccaaaaatgtgttttggcatct |
3878959 |
T |
|
| Q |
301 |
cctaatagaattggcattgatgctgatttcagaacaccaattattcttccaattttgaggctggacttcccattccatgtacacagagagaagagtaaaa |
400 |
Q |
| |
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||| ||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3878958 |
cctcatagatttggcattgatgctgttttcccaacaccatttattcttccaattttgaggctggacttcccattccatgtacacagagagaagagtaaaa |
3878859 |
T |
|
| Q |
401 |
aggtcaccctcgcaatggcaaaattgcactttctgacaatcagatttttgcttatcatcttcattaccaactctgcaaaatacgcttct |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
3878858 |
aggtcaccctcgcaatggcaaaattgcactttctgacaatcagatttttgcttatcaccttcattaccaactctgcaaaatacgcttct |
3878770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 39320418 - 39320896
Alignment:
| Q |
1 |
ttcattagactctgaacgaagctcataaaaaaccacccaactaggcctctgggaaaatacaagcaaggaacaagatggatgtagttgaacatgtttctcc |
100 |
Q |
| |
|
|||||||||| |||| |||||||| |||||| ||||||||||||| ||| | ||||||||||||||| |||||||||| ||||||||||||| | |
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| T |
39320418 |
ttcattagacactgagagaagctcaccaaaaactacccaactaggccgctgagcaaatacaagcaaggatgaagatggatgaagttgaacatgttgtcca |
39320517 |
T |
|
| Q |
101 |
gtttgagctactatgtaaccaagttgattgcgtccagagtacatggctacattttcagaaagtgaggacagtatagcctttttcatgttctcatcgtgaa |
200 |
Q |
| |
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||||| |||||| ||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||| ||| |||| |
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|
| T |
39320518 |
gtttgggctacttcataa---agttgattgcgtccagagaacatggctacattttcagcaagtgaggacagtataacctttttcaaattcttatcatgaa |
39320614 |
T |
|
| Q |
201 |
tagaagggttatgagggtcccaacgccagtaacttggaacaacaaggccaagttcacgcactaggaaagattcaacctccaaaaatgggtggtggaatct |
300 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||| ||||||||||||| | |||||||| || || ||| |||| |
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| T |
39320615 |
cagaaggcgtatgagggttccaacgccagtaacttggaacaacaaagccatgttcacgctctaggaaagattctaactccaaaactgtgtcttggcatct |
39320714 |
T |
|
| Q |
301 |
cctaatagaattggcattgatgctgatttcagaacaccaattattcttccaattttgaggctggacttcccattccatgtacacagagagaagagtaaaa |
400 |
Q |
| |
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||| ||| | ||||||||||||||| |||| ||||||| |||||| ||| || | ||||||| ||||||||||| |||| || ||||||||||||||| |
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| T |
39320715 |
cctcatacatttggcattgatgctgttttcccaacaccatttattcctcctatctcgaggctgagcttcccattccttgtataccgagagaagagtaaaa |
39320814 |
T |
|
| Q |
401 |
aggtcaccctcgcaatggcaaaattgcactttctgacaatcagatttttgcttatcatcttcattaccaactctgcaaaata |
482 |
Q |
| |
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|||||||| || |||||||||||||||||| ||||||||||| |||| || ||| |||||||||||| ||||||||||| |
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|
| T |
39320815 |
aggtcaccatcaggatggcaaaattgcactttgagacaatcagatctttgtttgtcaccttcattaccaaatctgcaaaata |
39320896 |
T |
|
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