View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16809_low_7 (Length: 494)

Name: NF16809_low_7
Description: NF16809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16809_low_7
NF16809_low_7
[»] chr2 (2 HSPs)
chr2 (1-476)||(35400631-35401105)
chr2 (1-113)||(38832785-38832897)
[»] chr4 (3 HSPs)
chr4 (108-192)||(27758342-27758426)
chr4 (2-113)||(27758175-27758286)
chr4 (112-192)||(35434398-35434478)
[»] scaffold0189 (2 HSPs)
scaffold0189 (1-84)||(10542-10627)
scaffold0189 (1-44)||(10636-10679)
[»] chr8 (2 HSPs)
chr8 (1-81)||(993940-994020)
chr8 (112-223)||(993772-993883)
[»] chr7 (2 HSPs)
chr7 (1-87)||(48473897-48473983)
chr7 (112-223)||(13073971-13074081)
[»] chr5 (3 HSPs)
chr5 (1-71)||(14695921-14695991)
chr5 (1-44)||(14695869-14695912)
chr5 (112-187)||(14696130-14696205)
[»] chr3 (1 HSPs)
chr3 (108-174)||(28984047-28984113)
[»] chr6 (1 HSPs)
chr6 (26-95)||(3049085-3049153)


Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 35401105 - 35400631
Alignment:
Q  1 gcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaaatgaaaccttgatattattcaacatatttgaattgatccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35401105 gcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaagtgaaaccttgatattattcaacatatttgaattgatccc 35401006  T
Q  101 ctgttacatcataaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactctacttgctcccaaa 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  35401005 ctattacatcataaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactctact-gctcacaaa 35400907  T
Q  201 ttcttcatctaacgaggtggtattagtctcaggattacaagacaaagagatacgcaccatctccactcaaaatctaaagatattaggtatacgagttctc 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35400906 ttcttcatctaacgaggtcgtattagtctcaggattacaagacaaagagatacgcaccatctccactcaaaatctaaagatattaggtatatgagttctc 35400807  T
Q  301 tatatatccaacatttagcatattcatgattgatgtttgactagtcactcacacttgagcccaacaagtacacaactcatgacttgtttcattggttgcc 400  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35400806 tctatatccaacatttagcatattcatgattgatgtttgactagtcactcacacttgagcccaacaagtacacaactcatgacttgtttcattggttgcc 35400707  T
Q  401 aaagataatgaaattagataaaatccacattacattatgcaaatttatattcataagattgaaatgagtcacactt 476  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35400706 aaaggtaatgaaattagataaaatccacattacattatgcaaatttatattcataagattgaaatgagtcacactt 35400631  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 38832897 - 38832785
Alignment:
Q  1 gcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaaatgaaaccttgatattattcaacatatttgaattgatccc 100  Q
    ||||||||||||||||||| |  ||||| ||| |||   || ||||||||   ||||||| |||||||| | | ||||||||||||||| ||||||| |     
T  38832897 gcactcttcgagtgagtgtcaaatcctatagaaaaacgtgaagagaaattggagaagaaagtgaaacctagttcttattcaacatatttaaattgattca 38832798  T
Q  101 ctgttacatcata 113  Q
     ||||||||||||    
T  38832797 atgttacatcata 38832785  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 27758342 - 27758426
Alignment:
Q  108 atcataaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactctacttg 192  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||||||| ||||  |||||||||||||  |||||||||||    
T  27758342 atcataaatttagaaaaggaaataaactaaaccataaaattagaaaaaggaaataacttaatgtaatcaagttcaactctacttg 27758426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 27758175 - 27758286
Alignment:
Q  2 cactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaaatgaaaccttgatattattcaacatatttgaattgatcccc 101  Q
    |||| ||||||||| ||||| ||  |||||||||||||||||| |||||| |||||||| |||||||||  ||||||||||||||| ||||||| | | |    
T  27758175 cacttttcgagtgaatgtaaacttttagagagaaaatagatgacaaattaaggaagaaagtgaaaccttattattattcaacatatctgaattggttcac 27758274  T
Q  102 tgttacatcata 113  Q
    | ||||||||||    
T  27758275 tattacatcata 27758286  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 35434478 - 35434398
Alignment:
Q  112 taaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactctacttg 192  Q
    |||||| | ||||| |||||||||||||| ||||||||||||  | || ||||  || ||||||||||  |||||||||||    
T  35434478 taaattcaagaaagaaaataaattgaaccgtaaaattagaaatggaaaataacttaacgtaatcaagtgcaactctacttg 35434398  T

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Target: scaffold0189 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 10627 - 10542
Alignment:
Q  1 gcactcttcgagtgagtgtaatctcctag-agagaaaatagatgagaaattatggaagaaaatg-aaaccttgatattattcaaca 84  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||||||||| || ||||| || |||||||| ||||||||||||    
T  10627 gcactcttcgagtaagtgtaaactcctaggagagaaaatagatgagaaattaggggagaaagtgaaaaccttgttattattcaaca 10542  T

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Target: scaffold0189; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10679 - 10636
Alignment:
Q  1 gcactcttcgagtgagtgtaatctcctagagagaaaatagatga 44  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||    
T  10679 gcactcttcgagtgagtgtaaactcctagagagaaaagagatga 10636  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 994020 - 993940
Alignment:
Q  1 gcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaaatgaaaccttgatattattca 81  Q
    ||||||||||| || |||||| ||||||||||||||  ||||||||||||| |||||||| |||||| ||| |||||||||    
T  994020 gcactcttcgaatgcgtgtaaactcctagagagaaatcagatgagaaattaaggaagaaagtgaaacattgttattattca 993940  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 993883 - 993772
Alignment:
Q  112 taaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagt-ataactctacttgctcccaaattcttcatct 210  Q
    ||||||||| |||| ||||||| | |||||||||||||| ||| | || ||| |||||||||||||||   |||||| || |||| ||||| ||| ||||    
T  993883 taaatttagaaaagaaaataaagttaaccataaaattaggaaaggaaaataa-cgaatgtaatcaagtgcaaactctgctagctcacaaatccttaatct 993785  T
Q  211 aacgaggtggtat 223  Q
     ||||||| ||||    
T  993784 gacgaggtcgtat 993772  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 48473983 - 48473897
Alignment:
Q  1 gcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaaatgaaaccttgatattattcaacatat 87  Q
    |||||||||||||||||||   ||||||||||||||| |||||| |||||  |||||||| |||| ||||| ||||||| |||||||    
T  48473983 gcactcttcgagtgagtgtcgactcctagagagaaaagagatgaaaaattggggaagaaagtgaacccttgttattatttaacatat 48473897  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 13073971 - 13074081
Alignment:
Q  112 taaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactctacttgctc-ccaaattcttcatct 210  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||   |||||| |||||||||||   ||||||||||||| | |||| ||||||||    
T  13073971 taaatttaggaaaggaaataaacataaccataaaattag-aaaaggagaaaaccgattgtaatcaagt-gcactctacttgctcacaaaatccttcatct 13074068  T
Q  211 aacgaggtggtat 223  Q
    || ||||| ||||    
T  13074069 aaggaggtcgtat 13074081  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 14695921 - 14695991
Alignment:
Q  1 gcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaaatgaaaccttg 71  Q
    ||||||||  ||||||||||| |||||| |||| ||||||||||||||||| |||||||| ||||||||||    
T  14695921 gcactctttaagtgagtgtaaactcctatagaggaaatagatgagaaattagggaagaaagtgaaaccttg 14695991  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14695869 - 14695912
Alignment:
Q  1 gcactcttcgagtgagtgtaatctcctagagagaaaatagatga 44  Q
    ||||||||||||||||||  | ||||||||||||||||||||||    
T  14695869 gcactcttcgagtgagtgctaactcctagagagaaaatagatga 14695912  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 14696130 - 14696205
Alignment:
Q  112 taaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactct 187  Q
    |||||||||||||| |||||||   ||| |||||||||| ||| |||| ||||  ||||||||||||| |||||||    
T  14696130 taaatttaggaaagaaaataaaccaaactataaaattaggaaagggaattaactaaatgtaatcaagtgtaactct 14696205  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 28984047 - 28984113
Alignment:
Q  108 atcataaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaat 174  Q
    ||||||||| |||||||||||||||| |||||| ||||||||| ||| |||| |||| |||||||||    
T  28984047 atcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgtaat 28984113  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 3049085 - 3049153
Alignment:
Q  26 ctagagagaaaatagatgagaaattatggaagaaaatgaaaccttgatattattcaacatatttgaattg 95  Q
    ||||||||||||||||||||||||||  |||||||   ||||| || ||||||||||||||  |||||||    
T  3049085 ctagagagaaaatagatgagaaattagtgaagaaaccaaaacc-tgttattattcaacataactgaattg 3049153  T

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