View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16811_high_15 (Length: 336)

Name: NF16811_high_15
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16811_high_15
NF16811_high_15
[»] chr8 (12 HSPs)
chr8 (18-320)||(3160039-3160341)
chr8 (134-320)||(2874712-2874896)
chr8 (180-320)||(2889388-2889526)
chr8 (18-142)||(2889561-2889685)
chr8 (53-143)||(2874920-2875010)
chr8 (227-310)||(2797334-2797417)
chr8 (53-143)||(2797225-2797314)
chr8 (262-320)||(3145418-3145474)
chr8 (183-320)||(4416772-4416903)
chr8 (18-52)||(2875298-2875332)
chr8 (129-183)||(15131733-15131787)
chr8 (128-186)||(18393290-18393348)
[»] chr2 (3 HSPs)
chr2 (18-136)||(41849222-41849335)
chr2 (129-183)||(32200609-32200663)
chr2 (133-185)||(4747814-4747866)
[»] chr7 (1 HSPs)
chr7 (134-183)||(45215789-45215838)
[»] chr6 (4 HSPs)
chr6 (134-182)||(19294696-19294744)
chr6 (136-186)||(17540400-17540450)
chr6 (134-179)||(2602442-2602487)
chr6 (132-180)||(34013863-34013911)
[»] chr1 (3 HSPs)
chr1 (134-185)||(48632320-48632371)
chr1 (147-183)||(32741216-32741252)
chr1 (18-46)||(48632494-48632522)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 3160039 - 3160341
Alignment:
Q  18 tcagacatttgtttgagttgtctgacatgcctcatggagtataagttttatataggtgttgggcacctgtccaaggagtgtcaaaataaagaagaaaaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  3160039 tcagacatttgtttgagttgtctgacatgcctcatggagtataagttttatataggtgttgggcaccagtccaaggagtgtcaaaataaaggagaaaaac 3160138  T
Q  118 atttatttagtacacttgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcataggttagtgacttgtgcaccaatctcatgtgagtacg 217  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3160139 atttatttagtacacttgtcggacactgcgacatgcgtaatcctagaggtgtccgtgcttcataggttagtgacttgtgcaccaatctcatgtgagtacg 3160238  T
Q  218 gagataaaagagaggggatgggtagtggagaaggcattctgaagtattattagagttggttactagagtttctctttagttatgagcatagtgctctctt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||    
T  3160239 gagataaaagagaggggatgggtagtggagaaggcattctgaagtattattggagttggttactagagtttctctctagttaggagcatagtgctctctt 3160338  T
Q  318 tag 320  Q
    |||    
T  3160339 tag 3160341  T

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Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 134 - 320
Target Start/End: Complemental strand, 2874896 - 2874712
Alignment:
Q  134 tgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcataggttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggg 233  Q
    ||||||| || |||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874896 tgtcggagaccgcgacatgcgtaatcctagaggtgtccgtgcttcataggttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggg 2874797  T
Q  234 gatgggtagtggagaaggcattctgaagtattattagagttggttactagagtttctctttagttatgagcatagtgctctctttag 320  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |  |||||||||||||||||||||||||||    
T  2874796 gatggatagtggagaaggcattctgatgtattattagagttggttactagagcttcgc--tagttatgagcatagtgctctctttag 2874712  T

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Target: chr8; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 180 - 320
Target Start/End: Complemental strand, 2889526 - 2889388
Alignment:
Q  180 taggttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggggatgggtagtggagaaggcattctgaagtattattagagttggtta 279  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2889526 taggttagtgacttgtgcaccaatctcatgtgagtagggagataaaagagaggggatgggtagtggagaaggcattctgaagtattgttagagttggtta 2889427  T
Q  280 ctagagtttctctttagttatgagcatagtgctctctttag 320  Q
    ||||||||||||  |||||| ||||||||||||||||||||    
T  2889426 ctagagtttctc--tagttaggagcatagtgctctctttag 2889388  T

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Target: chr8; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 2889685 - 2889561
Alignment:
Q  18 tcagacatttgtttgagttgtctgacatgcctcatggagtataagttttatataggtgttgggcacctgtccaaggagtgtcaaaataaagaagaaaaac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||     
T  2889685 tcagacatttgtttgagttgtctgacatgcctcatggagtataagttttatagaggtgttgggtaccagtccaaggagtgtcaaaataaaggagaaaaat 2889586  T
Q  118 atttatttagtacacttgtcggaca 142  Q
    |||||||||||||||||||| ||||    
T  2889585 atttatttagtacacttgtctgaca 2889561  T

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Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 2875010 - 2874920
Alignment:
Q  53 ggagtataagttttatataggtgttgggcacctgtccaaggagtgtcaaaataaagaagaaaaacatttatttagtacacttgtcggacac 143  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  2875010 ggagtataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaagaagaaaaccatttatttagtacacttgtctgacac 2874920  T

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Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 2797334 - 2797417
Alignment:
Q  227 gagaggggatgggtagtggagaaggcattctgaagtattattagagttggttactagagtttctctttagttatgagcatagtg 310  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  2797334 gagaggggatgggtagtggagaaggcattctgatgtattattagatttggttactagagtttctctctagttaggagcatagtg 2797417  T

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Target: chr8; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 2797225 - 2797314
Alignment:
Q  53 ggagtataagttttatataggtgttgggcacctgtccaaggagtgtcaaaataaagaagaaaaacatttatttagtacacttgtcggacac 143  Q
    ||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  2797225 ggagtataagtttta-ataggttttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacac 2797314  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 3145418 - 3145474
Alignment:
Q  262 tattattagagttggttactagagtttctctttagttatgagcatagtgctctctttag 320  Q
    |||| |||||||||||||||||||||||||  |||||| ||||||||||||||||||||    
T  3145418 tattgttagagttggttactagagtttctc--tagttaggagcatagtgctctctttag 3145474  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 320
Target Start/End: Original strand, 4416772 - 4416903
Alignment:
Q  183 gttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggggatgggtagtggagaaggcattctgaagtattattagagttggttacta 282  Q
    |||||||||||||||||||||||||| |||||||||  |||||||| |       ||||||||||||||||||| ||  |||| ||||| |||| |   |    
T  4416772 gttagtgacttgtgcaccaatctcatatgagtacggttataaaagata------tggtagtggagaaggcattccgagatattgttagaattggctggga 4416865  T
Q  283 gagtttctctttagttatgagcatagtgctctctttag 320  Q
    |||||||||| | |||| ||| | |||||||| |||||    
T  4416866 gagtttctctctggttaggagtagagtgctctgtttag 4416903  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 2875332 - 2875298
Alignment:
Q  18 tcagacatttgtttgagttgtctgacatgcctcat 52  Q
    ||||||||||||||||||||||| |||||||||||    
T  2875332 tcagacatttgtttgagttgtctaacatgcctcat 2875298  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 15131787 - 15131733
Alignment:
Q  129 acacttgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcatagg 183  Q
    |||| |||||||||| ||||||||| || |||| |||||||| ||||||||||||    
T  15131787 acacgtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatagg 15131733  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 18393348 - 18393290
Alignment:
Q  128 tacacttgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcataggtta 186  Q
    ||||| |||| |||||| ||| |||| ||||||| ||||||| ||||||||||||||||    
T  18393348 tacacatgtcagacactccgaaacgcctaatcctagaggtgtttgtgcttcataggtta 18393290  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 41849222 - 41849335
Alignment:
Q  18 tcagacatttgtttgagttgtctgacatgcctcatggagtataagttttatataggtgttgggcacctgtccaaggagtgtcaaaataaagaagaaaaac 117  Q
    |||||||||||||||||||||| |||| |||||||     |||||| |||||||||||| || |||| |||||||||||||| ||||||| |||||||      
T  41849222 tcagacatttgtttgagttgtccgacacgcctcat-----ataagtgttatataggtgtcggacaccagtccaaggagtgtcgaaataaaaaagaaaata 41849316  T
Q  118 atttatttagtacacttgt 136  Q
    | |||||||| ||||||||    
T  41849317 acttatttaggacacttgt 41849335  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 32200663 - 32200609
Alignment:
Q  129 acacttgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcatagg 183  Q
    |||| |||||||||| ||||||||| || |||| |||||||| ||||||||||||    
T  32200663 acacgtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatagg 32200609  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 4747866 - 4747814
Alignment:
Q  133 ttgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcataggtt 185  Q
    |||||||||||  |||||||| || |||| |||||||| ||||||||||||||    
T  4747866 ttgtcggacaccacgacacgcctagtcctagaggtgtccgtgcttcataggtt 4747814  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 45215838 - 45215789
Alignment:
Q  134 tgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcatagg 183  Q
    |||||||||| ||||||||| || ||||||||||||| ||||||||||||    
T  45215838 tgtcggacaccgcgacacgcctagtcctggaggtgtccgtgcttcatagg 45215789  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 19294696 - 19294744
Alignment:
Q  134 tgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcatag 182  Q
    |||||||||| ||||||||| ||||||| |||||||| |||||||||||    
T  19294696 tgtcggacaccgcgacacgcctaatcctagaggtgtcggtgcttcatag 19294744  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 17540400 - 17540450
Alignment:
Q  136 tcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcataggtta 186  Q
    |||||||||||||||||  ||||||| ||||||| ||||||||||| ||||    
T  17540400 tcggacactgcgacacgtctaatcctagaggtgtatgtgcttcatatgtta 17540450  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 2602442 - 2602487
Alignment:
Q  134 tgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttca 179  Q
    |||||||||||||||||||| |||||||  ||||||||||| ||||    
T  2602442 tgtcggacactgcgacacgcttaatcctaaaggtgtctgtgtttca 2602487  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 34013863 - 34013911
Alignment:
Q  132 cttgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcat 180  Q
    |||||||||||| ||||||||| || |||| |||||||| |||||||||    
T  34013863 cttgtcggacaccgcgacacgcctagtccttgaggtgtccgtgcttcat 34013911  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 48632371 - 48632320
Alignment:
Q  134 tgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcataggtt 185  Q
    |||||||||| ||||||||| || |||| |||||||| ||||||||||||||    
T  48632371 tgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcataggtt 48632320  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 32741216 - 32741252
Alignment:
Q  147 gacacgcgtaatcctggaggtgtctgtgcttcatagg 183  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  32741216 gacacgcctaatcctggaggtgtccgtgcttcatagg 32741252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 48632522 - 48632494
Alignment:
Q  18 tcagacatttgtttgagttgtctgacatg 46  Q
    |||||||||||||||||||||||||||||    
T  48632522 tcagacatttgtttgagttgtctgacatg 48632494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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