View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16811_high_19 (Length: 260)

Name: NF16811_high_19
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16811_high_19
NF16811_high_19
[»] chr8 (9 HSPs)
chr8 (1-250)||(3159777-3160026)
chr8 (5-250)||(2889705-2889950)
chr8 (5-250)||(2875350-2875595)
chr8 (15-250)||(3145185-3145420)
chr8 (63-250)||(2796137-2796327)
chr8 (64-142)||(18393581-18393659)
chr8 (64-179)||(27401840-27401955)
chr8 (5-54)||(2796835-2796884)
chr8 (64-139)||(1226113-1226187)
[»] chr2 (5 HSPs)
chr2 (64-187)||(17651268-17651391)
chr2 (64-139)||(44649997-44650072)
chr2 (64-178)||(4748110-4748224)
chr2 (187-249)||(41848957-41849019)
chr2 (187-247)||(38783772-38783832)
[»] chr1 (5 HSPs)
chr1 (64-253)||(16426366-16426564)
chr1 (64-144)||(3387707-3387787)
chr1 (83-187)||(50127210-50127313)
chr1 (64-179)||(3954967-3955082)
chr1 (64-144)||(48632613-48632693)
[»] scaffold0012 (1 HSPs)
scaffold0012 (64-245)||(209133-209321)
[»] scaffold1723 (1 HSPs)
scaffold1723 (65-246)||(369-557)
[»] chr6 (3 HSPs)
chr6 (64-142)||(2602143-2602221)
chr6 (64-142)||(33234886-33234962)
chr6 (187-246)||(2602031-2602090)
[»] chr7 (9 HSPs)
chr7 (64-127)||(9729906-9729969)
chr7 (83-187)||(27993911-27994015)
chr7 (64-142)||(11809308-11809386)
chr7 (5-187)||(11820493-11820681)
chr7 (89-132)||(25445505-25445549)
chr7 (83-144)||(32716562-32716623)
chr7 (64-128)||(37338793-37338857)
chr7 (64-142)||(48598363-48598441)
chr7 (64-138)||(6439797-6439871)
[»] chr4 (2 HSPs)
chr4 (195-250)||(32593730-32593785)
chr4 (69-126)||(32593896-32593953)
[»] chr5 (1 HSPs)
chr5 (189-249)||(41815776-41815836)
[»] scaffold0325 (1 HSPs)
scaffold0325 (64-127)||(12947-13010)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 3160026 - 3159777
Alignment:
Q  1 cttacacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3160026 cttacacacatagtatattcaagagttaaagacgtgcggaaaatgttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatatt 3159927  T
Q  101 agatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaattta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  3159926 agatggataaataaaggccaaatactattgtaacttgttatagacctttttttaatgaaataaattgctcaagttagatacatatttgattctcaattta 3159827  T
Q  201 gatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 250  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3159826 gatctttcataaataaattagtatacaggtagcagtgtcggtgtcctatg 3159777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 2889705 - 2889950
Alignment:
Q  5 cacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagat 104  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  2889705 cacacatagtatattcaagagttaaagacgtgcggaaaatgttgatcaacgaagggctataaagttgaatacaacgtttttaaatttttcgatagtagat 2889804  T
Q  105 ggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatc 204  Q
    |||||||||||||||||||||||||||| |||||||||||||       ||||||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  2889805 ggataaataaaggccaaatactattgtatcttgttatagacctttttttaatgaaataaattgctcaagtaagatacatacgtgattctcaatttagatc 2889904  T
Q  205 tttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 250  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  2889905 tttcataaataaattagtatacaagtagcagtgtcggtgtcctatg 2889950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 2875350 - 2875595
Alignment:
Q  5 cacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagat 104  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2875350 cacacatagtatattcaagagttgaagacgtgaggaaaatgttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcaatagtagat 2875449  T
Q  105 ggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatc 204  Q
    |||||||||||||||||||||||||||| ||||||||| |||       |||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  2875450 ggataaataaaggccaaatactattgtatcttgttataaacctttttttaatgaactaaattgctcaagttagatacatatgtgattctcaattaagatc 2875549  T
Q  205 tttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 250  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||||    
T  2875550 tttcataaatagattagtatacaggtggcagtgtcggtgtcctatg 2875595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 3145420 - 3145185
Alignment:
Q  15 atattcaagagttaaagacgtgcggaaaatcttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataa 114  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  3145420 atattcaagagttaaagacgtgcggaaaatgttgatcaacgaagggctataaagttgaatacaacgtttttaaatttttcgatagtagatggataaataa 3145321  T
Q  115 aggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagat 214  Q
    |||||||||||||||||| |||||||||||||       ||||||||||||| ||||||| ||||||||  |||||||||||||||||||||||||| ||    
T  3145320 aggccaaatactattgtatcttgttatagacctttttttaatgaaataaattgctcaagtaagatacatgcgtgattctcaatttagatctttcataaat 3145221  T
Q  215 aaattagtatacaggtagcagtgtcggtgtcctatg 250  Q
    ||||||||||||| |||| |||||||||||||||||    
T  3145220 aaattagtatacaagtagtagtgtcggtgtcctatg 3145185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 63 - 250
Target Start/End: Complemental strand, 2796327 - 2796137
Alignment:
Q  63 ataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagacc---nnnnnnnaatgaa 159  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||    
T  2796327 ataaagttgattacaacgtatttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccttttttttttaatgaa 2796228  T
Q  160 ataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 250  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||| |||||||||||    
T  2796227 ataaattgctcaagttagatgcatatgtgattctcaattaagatctttcataaataaattagtatagaagtagcagtgtgggtgtcctatg 2796137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 18393581 - 18393659
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 142  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||    
T  18393581 taaagttgattacaacgtttttaaattttttgatagtagatggataaataaaggtcaaatactattttatcttgttata 18393659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 27401955 - 27401840
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 163  Q
    |||||||||||||||||| |||   | |||| |||||||||||||||||||||||||||| |||||||| ||||||||| | |       ||||||||||    
T  27401955 taaagttgattacaacgtttttttttctttcaatagtagatggataaataaaggccaaattctattgtatcttgttatataactttttttaatgaaataa 27401856  T
Q  164 attactcaagttagat 179  Q
    ||| ||||||||||||    
T  27401855 attgctcaagttagat 27401840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 2796884 - 2796835
Alignment:
Q  5 cacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaac 54  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  2796884 cacacatagtatattcaagagttgaagacgtgaggaaaatgttgatcaac 2796835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 1226187 - 1226113
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgtt 139  Q
    |||||||||||||||| | ||||||||||| ||||||||||| ||||||||||  |||||||| | ||| ||||||    
T  1226187 taaagttgattacaacatttttaaattttt-gatagtagatgaataaataaagatcaaatactctggtatcttgtt 1226113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 17651391 - 17651268
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 163  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |       ||||||||||    
T  17651391 taaagttgattacaacgtatttaagtttttcaatagtagatggataaataaaggccaaatattattgtaacttgttatagaacttcttgtaatgaaataa 17651292  T
Q  164 attactcaagttagatacatatgt 187  Q
    ||| |||||||||||| |||||||    
T  17651291 attgctcaagttagatgcatatgt 17651268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 44649997 - 44650072
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgtt 139  Q
    |||||||||||||||| | ||||| ||||| ||||||||||| ||||||||||| ||||| |||| ||| ||||||    
T  44649997 taaagttgattacaacatttttaacttttttgatagtagatgaataaataaaggtcaaattctatggtatcttgtt 44650072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 4748110 - 4748224
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 163  Q
    |||||||||||||| | | ||||  || ||| |||| ||||| ||||||||||| |||||||||| |||||||||| |||| |       ||||||||||    
T  4748110 taaagttgattacagcatttttagtttgttcaatagaagatgaataaataaaggtcaaatactatcgtaacttgttttagaactttttccaatgaaataa 4748209  T
Q  164 attactcaagttaga 178  Q
    ||| |||||||||||    
T  4748210 attgctcaagttaga 4748224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 41849019 - 41848957
Alignment:
Q  187 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctat 249  Q
    ||||||||||||||||| ||| ||| |||||||| |||| || |||| |||||||||||||||    
T  41849019 tgattctcaatttagatattttataaataaattaatatatagatagcggtgtcggtgtcctat 41848957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 38783772 - 38783832
Alignment:
Q  187 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcct 247  Q
    |||||||||||| |||| ||| ||| |||||||| |||| || |||||| |||||||||||    
T  38783772 tgattctcaattcagatattttataaataaattaatatatagatagcagcgtcggtgtcct 38783832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 253
Target Start/End: Complemental strand, 16426564 - 16426366
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 163  Q
    ||||||||||||||  |  |||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||| |       |||||| |||    
T  16426564 taaagttgattacagtgcatttaaatttttcaataatagatagataaataaaggccaaatactattgtaatttgttatagaacttgttttaatgaagtaa 16426465  T
Q  164 attactcaagttagatacatatg---------tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgctt 253  Q
    ||| |||||||||||| ||||||         ||||||| |||||| |||||| ||| |||||||| |||| ||||||| ||||| |||||||||||||    
T  16426464 attgctcaagttagatgcatatgtatgtattttgattcttaatttatatcttttataaataaattaatatataggtagcggtgtcagtgtcctatgctt 16426366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 3387787 - 3387707
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 144  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| || |||||||||||    
T  3387787 taaagttgattacaacgtttttaaatttttcgatggtagatgaataaataaaggtcaaatactattttatcttgttataga 3387707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 50127210 - 50127313
Alignment:
Q  83 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagataca 182  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |       |||||||||||||  ||||||||||| ||    
T  50127210 tttaaatttttcgatagtagatgaa-aaataaaggccaaatactattgtatcttgttatagaactttatttaatgaaataaattgttcaagttagatgca 50127308  T
Q  183 tatgt 187  Q
    |||||    
T  50127309 tatgt 50127313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 3955082 - 3954967
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 163  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||| || ||| ||| || |||| |       ||||||||||    
T  3955082 taaagttgattacaacgtttttagctttttcgatagtagatggataaataaaggtcaaatacgatcgtatcttattttagaactttttttaatgaaataa 3954983  T
Q  164 attactcaagttagat 179  Q
    ||| ||||||||||||    
T  3954982 attgctcaagttagat 3954967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 48632613 - 48632693
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 144  Q
    |||||||||||||||||| ||||  ||||| ||||||||| | ||||||||||| |||||||||| ||| |||||| ||||    
T  48632613 taaagttgattacaacgtttttagcttttttgatagtagaagaataaataaaggtcaaatactatggtatcttgttttaga 48632693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 245
Target Start/End: Complemental strand, 209321 - 209133
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 163  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| | |||||  |||||||||| |       ||||||||||    
T  209321 taaagtttattacaacgtttttaaatttttcgattgtagatggataaataaaggccaaatattgttgtattttgttatagaactttttttaatgaaataa 209222  T
Q  164 attactcaagttagatacatatg---------tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtc 245  Q
    ||| ||  |||||||| ||||||         ||||||||||||||||| ||| ||| |||||||| |||| |  |||||||||| |||||    
T  209221 attgct--agttagatgcatatgtatgtattttgattctcaatttagatattttataaataaattaatatataaatagcagtgtctgtgtc 209133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 246
Target Start/End: Original strand, 369 - 557
Alignment:
Q  65 aaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaa 164  Q
    |||||||||| |||||| ||| |||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||         ||||||||||     
T  369 aaagttgattccaacgtatttcaatttt-cgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaattttttttaatgaaataat 467  T
Q  165 ttactcaagttagatacata--------tgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcc 246  Q
    || |||||||||||| ||||        | ||||||| |||| |||||||| ||| |||||||| |||| || |||| ||||||||||||    
T  468 ttgctcaagttagatgcatattatgtattttgattcttaattaagatcttttataaataaattaatatatagatagcggtgtcggtgtcc 557  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 2602221 - 2602143
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 142  Q
    ||||||||||||||||   ||||||||||||||||||| |||||||||||||||  ||||||||||||| |||||||||    
T  2602221 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggtaaatactattgtatcttgttata 2602143  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 33234886 - 33234962
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 142  Q
    |||||||||||||||| | || ||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||||    
T  33234886 taaagttgattacaacattttgaaatttt-cgatagtagatggataaat-aaggtcaaatactattgtatcttgttata 33234962  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 2602090 - 2602031
Alignment:
Q  187 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcc 246  Q
    ||||||| ||||||||||||| ||| |||||||| |||| ||||||  ||||||||||||    
T  2602090 tgattcttaatttagatcttttataaataaattaatatataggtagaggtgtcggtgtcc 2602031  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 9729906 - 9729969
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatacta 127  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||||    
T  9729906 taaagttgattacaacgcatttaaatttttcgatagtaggtggataaataaagtccaaatacta 9729969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 27994015 - 27993911
Alignment:
Q  83 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagataca 182  Q
    ||||||||||||||| ||||||||||||||||||  ||| | |||||||| ||||||||||| |       ||||||||||||| ||||||||| || ||    
T  27994015 tttaaatttttcgatggtagatggataaataaagatcaattgctattgtatcttgttatagaactttatttaatgaaataaattgctcaagttaaatgca 27993916  T
Q  183 tatgt 187  Q
    |||||    
T  27993915 tatgt 27993911  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 11809308 - 11809386
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 142  Q
    |||| ||||||||||| | ||||||||||| ||  ||||||| |  ||||||||||||||||||||||| |||||||||    
T  11809308 taaatttgattacaacctttttaaattttttgacggtagatgaagtaataaaggccaaatactattgtatcttgttata 11809386  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 187
Target Start/End: Original strand, 11820493 - 11820681
Alignment:
Q  5 cacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaacgaagggcta-------taaagttgattacaacgtgtttaaatttttcgat 97  Q
    |||||| |||| |||||||||||||||| ||| |  |||| ||||||||||||||| ||       ||||| |||||||||| | |||||| ||||  ||    
T  11820493 cacacacagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaagggttatagacattaaagatgattacaacatttttaaaatttttaat 11820592  T
Q  98 agtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgt 187  Q
    |||||||  ||||||||||  ||||| ||||||||  |||| ||||| |       ||||||||||||| |||||||||||| |||||||    
T  11820593 agtagataaataaataaagctcaaatgctattgtatgttgtcatagaac-tttttgaatgaaataaattgctcaagttagatgcatatgt 11820681  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 25445549 - 25445505
Alignment:
Q  89 tttttcgatagtagatggataaat-aaaggccaaatactattgta 132  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  25445549 tttttcgatagtagatggataaataaaaggccaaatactattgta 25445505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 32716562 - 32716623
Alignment:
Q  83 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 144  Q
    ||||| |||||||||||| |||| ||||||||||  |||||||||||||| |||||| ||||    
T  32716562 tttaactttttcgatagtggatgaataaataaagatcaaatactattgtatcttgttttaga 32716623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 37338793 - 37338857
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactat 128  Q
    |||||||||| | ||| | ||||| ||||| ||||||||||| ||||||||||| ||||||||||    
T  37338793 taaagttgataataacatttttaacttttttgatagtagatgaataaataaaggtcaaatactat 37338857  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 48598441 - 48598363
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatag-tagatggataaataaaggccaaatactattgtaacttgttata 142  Q
    |||||||| ||||||||| ||| ||||||| ||||  ||| |||||||||||||| |||||||||||||| | |||||||    
T  48598441 taaagttggttacaacgttttttaattttttgatatatag-tggataaataaaggtcaaatactattgtatcgtgttata 48598363  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 6439871 - 6439797
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgt 138  Q
    |||||||||||||||| | ||||  |||||||||||||| || ||||||| | | |||||||||| ||| |||||    
T  6439871 taaagttgattacaacatttttatctttttcgatagtagttgaataaatagatgtcaaatactatcgtatcttgt 6439797  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 32593785 - 32593730
Alignment:
Q  195 aatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 250  Q
    |||||||||| || ||| ||||||||||||||||||||| ||||| ||||||||||    
T  32593785 aatttagatcatttataaataaattagtatacaggtagcggtgtcagtgtcctatg 32593730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 32593953 - 32593896
Alignment:
Q  69 ttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatact 126  Q
    |||||||||||   ||||||||||| || ||||||||||||||||||||| |||||||    
T  32593953 ttgattacaacacatttaaattttttgagagtagatggataaataaaggctaaatact 32593896  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 41815776 - 41815836
Alignment:
Q  189 attctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctat 249  Q
    ||||||||||| ||||||| ||| |||||||| |||| | ||||| |||||||||||||||    
T  41815776 attctcaatttggatcttttataaataaattaatatatatgtagcggtgtcggtgtcctat 41815836  T

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Target: scaffold0325 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 13010 - 12947
Alignment:
Q  64 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatacta 127  Q
    ||||||||||||||| || ||||  ||||| ||||||||||| ||||||||| | |||||||||    
T  13010 taaagttgattacaatgtttttagcttttttgatagtagatgaataaataaatgtcaaatacta 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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