View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16811_high_22 (Length: 242)
Name: NF16811_high_22
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16811_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 45528527 - 45528317
Alignment:
| Q |
16 |
taggatccatacaatcattactcaccggcctagcttcataaaccaaagccggaatttcttcatccctcgacatagcaagttcaaccaaaagcctcaaagg |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45528527 |
taggatccatacaatcattactcaccggcctagcctcataaaccaaagccggaatttcttcatccctcgacatagcaagttcaactaaaagcctcaaagg |
45528428 |
T |
|
| Q |
116 |
accaacaggcaacaaaaccgcagcaagatcatacaaagccatagcaacaagcatagcccatgttgtccattcaggcaacatagtaaaccaatacgcaacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45528427 |
accaacaggcaacaaaaccgcagcaagatcatacaaagccatagcaacaagcatagcccatgttgtccattcaggcaacatagtaaaccaatacgcaacc |
45528328 |
T |
|
| Q |
216 |
aatattccaat |
226 |
Q |
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||||||||||| |
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| T |
45528327 |
aatattccaat |
45528317 |
T |
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