View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16811_high_24 (Length: 238)
Name: NF16811_high_24
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16811_high_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31851320 - 31851083
Alignment:
| Q |
1 |
aatatcttcaactactttgattcacatttacttaattcacgatgaatgagataactatgtgctaaattctgatttatctcctccttataaatacagagat |
100 |
Q |
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| T |
31851320 |
aatatcttcaactactttgattcacatttacttaattcacgatgaatgagataactatgtgctaaattctgatttatctcctccatataaatacagagat |
31851221 |
T |
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| Q |
101 |
cagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaagtagtgatatgtcacctcctcgacgaaaacacaatactaatttgga |
200 |
Q |
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| T |
31851220 |
cagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaagtagtgatatgtcacctcctcgacgaaaacacaatactaatttgga |
31851121 |
T |
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| Q |
201 |
tcgtgatctctctccaccaaggaagaatccagaggagc |
238 |
Q |
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| T |
31851120 |
tcgtgatctctctccaccaaggaagaatccagaggagc |
31851083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 18397703 - 18397824
Alignment:
| Q |
65 |
aattctgatttatctcctccttataaatacagagatcagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaag-tagtgata |
163 |
Q |
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||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||| |||| |||||| ||||||| |||||||| |
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| T |
18397703 |
aattctgatttatctcctcctcgtaaacacagagatcagagtgttacagctgtagcttgtgaaccaaggtcatctagatcaaagtttgaagatagtgata |
18397802 |
T |
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| Q |
164 |
tgtcacctcctcgacgaaaaca |
185 |
Q |
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| T |
18397803 |
tgtcacctcctcgacggaaaca |
18397824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 11471089 - 11470968
Alignment:
| Q |
65 |
aattctgatttatctcctccttataaatacagagatcagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaag-tagtgata |
163 |
Q |
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||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||| |||||||||||| |||| |||||| ||||||| |||||||| |
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| T |
11471089 |
aattctgatttatctcctcctcgtaaacacagagatcagagtgttacagatgtagctcgtgaaccaaggtcatctagatcaaagtttgaagatagtgata |
11470990 |
T |
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| Q |
164 |
tgtcacctcctcgacgaaaaca |
185 |
Q |
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| T |
11470989 |
tgtcacctcctcgacggaaaca |
11470968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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