View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16811_high_4 (Length: 552)
Name: NF16811_high_4
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16811_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 15 - 532
Target Start/End: Original strand, 15661939 - 15662456
Alignment:
| Q |
15 |
cacagagaaaactgtaaacatataaacaacggtatcggtaaaaatgcaagaacagaaataaaattaggaacccatttcaaaccatgataatatgttatgt |
114 |
Q |
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| T |
15661939 |
cacagagaaaactgtaaacatataaacaacggtatcggtaaaaatgcaagaacagaaataaaattaggaacccatttcaaaccatgataatatgttatgt |
15662038 |
T |
|
| Q |
115 |
agaaagcactactaaatgctatcatcatgctgattatagacacaaacaatgccactagtccagatatcaacttcaaaggcagtgacttgagaaaatcttg |
214 |
Q |
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| T |
15662039 |
agaaagcactactaaatgctatcatcatgctgattatagacacaaacaatgccactagtccagatatcaacttcaaaggcagtgacttgagaaaatcttg |
15662138 |
T |
|
| Q |
215 |
ctccgcatatcgcgagataaggatggatagaaatatcaagattgaagttgaagacgagataagtgccatggagtcggataaagcaaatacgaggaatgca |
314 |
Q |
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| T |
15662139 |
ctccgcatatcgcgagataaggatggatagaaatatcaagattgaagttgaagacgagataagtgccatggagtcggataaagcaaatacgaggaatgca |
15662238 |
T |
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| Q |
315 |
ggcttatctaaataattaggagattctgtgttatcattgtttccacctggtaagctaaatgcagctgaaaacactccagttgcaatgagagtcgaaacaa |
414 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15662239 |
ggtttatctaaataattaggagattctttgttatcattgtttccacctggtaagctaaatgcagctgaaaacactccagttgcaattagagtcgaaacaa |
15662338 |
T |
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| Q |
415 |
ccatacaagaattcgctgtttgcttcatccatgactctccttttttaagcaattcagcatgttctttggtaaatagttcgcgaggtgtcattccttcaga |
514 |
Q |
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| T |
15662339 |
ccatacaagaattcgctgtttgcttcatccatgactctccttttttaagcaattcggcatgttctttggtaaatagttcgcgaggtgtcattccttcaga |
15662438 |
T |
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| Q |
515 |
atttttcatttcaatcat |
532 |
Q |
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| T |
15662439 |
atttttcatttcaatcat |
15662456 |
T |
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