View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16811_high_7 (Length: 468)

Name: NF16811_high_7
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16811_high_7
NF16811_high_7
[»] chr4 (2 HSPs)
chr4 (21-459)||(7584219-7584657)
chr4 (395-444)||(9931452-9931501)
[»] chr7 (5 HSPs)
chr7 (190-459)||(8976889-8977158)
chr7 (380-451)||(40039012-40039082)
chr7 (309-444)||(23616298-23616434)
chr7 (376-444)||(25832279-25832347)
chr7 (409-457)||(29478058-29478106)
[»] chr3 (3 HSPs)
chr3 (381-457)||(48432204-48432280)
chr3 (405-457)||(48435731-48435783)
chr3 (382-451)||(16983111-16983180)
[»] chr2 (1 HSPs)
chr2 (246-451)||(44957346-44957552)
[»] scaffold0018 (1 HSPs)
scaffold0018 (248-457)||(171619-171828)
[»] chr6 (3 HSPs)
chr6 (392-457)||(32814966-32815031)
chr6 (378-427)||(29610849-29610898)
chr6 (314-457)||(35129676-35129820)
[»] chr1 (4 HSPs)
chr1 (381-457)||(23193126-23193202)
chr1 (314-451)||(28857972-28858110)
chr1 (248-340)||(32987222-32987314)
chr1 (409-457)||(36724852-36724900)
[»] chr5 (1 HSPs)
chr5 (246-442)||(18265423-18265620)
[»] chr8 (1 HSPs)
chr8 (313-444)||(7145862-7145994)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 459
Target Start/End: Complemental strand, 7584657 - 7584219
Alignment:
Q  21 atctgctgaattagttaatccttaggttggataccattttttaaa-taacttcaacgttgttgatgtcttgtcaaccatggatctcctcagtgtaatact 119  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |  ||||   | |||||||||    
T  7584657 atcttctgaattagttaatccttaggttggataccattttttaaaataacttcaacgttgttgatgtcttgtcaaccacgtgtctc---aatgtaatact 7584561  T
Q  120 tttcttttagaccnnnnnnnnnnttaatcaaattacacaacaatagttttgaaaactagagcttgcaattgataattcatgttgaaacaatattcaagaa 219  Q
    ||| | |||||||          |||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  7584560 tttatgttagaccaaaaaaaaa-ttaagcaaattacatagcaataattttgcaaactagagcttgcaattgataattcatgttgaaacaatatttaagaa 7584462  T
Q  220 gcaattannnnnnnnnnnnnn---cagttaccgaagagattactaagacgagtcgtagactagttagatgtctttatgacgttttgtggtagtgtctaaa 316  Q
    |||||||                 ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7584461 gcaattaaatttttcttttttttccagttgccgaagagattactaagatgagtcgtagactagttagatgtctttatgacgttttgtggtagtgtctaaa 7584362  T
Q  317 attttgcaaacagactatcaatcaagacatccatatgataaaatagcacaactaaaacttatcggagtcctactacactgtagaatccgttttagaaata 416  Q
    |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7584361 attttgaaaacagactatcaatcaagacatccatatgataaaacagaacaactaaaacttatcggagtcctactacactgtagaatccgttttagaaata 7584262  T
Q  417 caacctcaaatatggtgttaagaccactataatatagtattat 459  Q
    ||||||||||||||||||||||| | |||||||||| ||||||    
T  7584261 caacctcaaatatggtgttaagatcgctataatataatattat 7584219  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 9931452 - 9931501
Alignment:
Q  395 tgtagaatccgttttagaaatacaacctcaaatatggtgttaagaccact 444  Q
    ||||| ||||||||||||||||||   | |||||||||||||||||||||    
T  9931452 tgtaggatccgttttagaaatacactttgaaatatggtgttaagaccact 9931501  T

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Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 190 - 459
Target Start/End: Original strand, 8976889 - 8977158
Alignment:
Q  190 gataattcatgttgaaacaatattcaagaagcaattannnnnnnnnnnnnncagttaccgaagagattactaagacgagtcgtagactagttagatgtct 289  Q
    |||||||||||||||||||||||| ||||||||||||              ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  8976889 gataattcatgttgaaacaatatttaagaagcaattaaattttttttttttcagttaccgaagatattactaagatgagtcgtagactagttagatgtct 8976988  T
Q  290 ttatgacgttttgtggtagtgtctaaaattttgcaaacagactatcaatcaagacatccatatgataaaatagcacaactaaaacttatcggagtcctac 389  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8976989 ttatgacgttttgtggtagtgtctaaaattttgaaaacagactatcaatcaagacatccatatgataaaacagcacaactaaaacttatcggagtcctac 8977088  T
Q  390 tacactgtagaatccgttttagaaatacaacctcaaatatggtgttaagaccactataatatagtattat 459  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||||||||| | |||||||||| ||||||    
T  8977089 tacactgtagagtccgttttagaaatacaaccttaaatattgtgttaagatctctataatatattattat 8977158  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 451
Target Start/End: Original strand, 40039012 - 40039082
Alignment:
Q  380 ggagtcctactacactgtagaatccgttttagaaatacaacctcaaatatggtgttaagaccactataatat 451  Q
    |||||| |||| |||| ||||||||||| ||||| |||||||||||||||| |||||| | |||| ||||||    
T  40039012 ggagtcttactgcactatagaatccgttctagaa-tacaacctcaaatatgatgttaaaatcactttaatat 40039082  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 444
Target Start/End: Complemental strand, 23616434 - 23616298
Alignment:
Q  309 tgtctaaaattttgcaaacagactatcaatcaagacatccatatgataaaatagcacaactaaaact-tatcggagtcctactacactgtagaatccgtt 407  Q
    |||| |||||| ||||| || |||||||| || ||| |||  ||||||||| | | |||||| || | |||| || ||||||| |||| ||| |||| ||    
T  23616434 tgtccaaaattgtgcaagcatactatcaaccacgacgtcctcatgataaaacaactcaactacaattgtatcagaatcctactgcactataggatccatt 23616335  T
Q  408 ttagaaatacaacctcaaatatggtgttaagaccact 444  Q
     ||||||| || | |||||||||||| ||||||||||    
T  23616334 ctagaaattcaccttcaaatatggtgctaagaccact 23616298  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 444
Target Start/End: Complemental strand, 25832347 - 25832279
Alignment:
Q  376 tatcggagtcctactacactgtagaatccgttttagaaatacaacctcaaatatggtgttaagaccact 444  Q
    |||| ||||| || |||||| ||||||| ||| ||||||||||   | |||||||||||||||||||||    
T  25832347 tatcagagtcatattacactatagaatctgttatagaaatacacttttaaatatggtgttaagaccact 25832279  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 457
Target Start/End: Complemental strand, 29478106 - 29478058
Alignment:
Q  409 tagaaatacaacctcaaatatggtgttaagaccactataatatagtatt 457  Q
    |||||||||| | |||||||||||| |||||||||| |||||| |||||    
T  29478106 tagaaatacaccttcaaatatggtgctaagaccactctaatatggtatt 29478058  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 381 - 457
Target Start/End: Complemental strand, 48432280 - 48432204
Alignment:
Q  381 gagtcctactacactgtagaatccgttttagaaatacaacctcaaatatggtgttaagaccactataatatagtatt 457  Q
    |||||||| | |||||||| ||| ||| |||||||||| | ||||||||||||||||||||||| |||||| |||||    
T  48432280 gagtcctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgttaagaccactctaatatggtatt 48432204  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 48435783 - 48435731
Alignment:
Q  405 gttttagaaatacaacctcaaatatggtgttaagaccactataatatagtatt 457  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||| |||||    
T  48435783 gttttagaaatacaccttcaaatatggtgctaagaccactctaatatggtatt 48435731  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 16983111 - 16983180
Alignment:
Q  382 agtcctactacactgtagaatccgttttagaaatacaacctcaaatatggtgttaagaccactataatat 451  Q
    ||||||| | |||| ||| ||| ||| |||||||||| | |||||||||||| |||||||||| ||||||    
T  16983111 agtcctattgcactataggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatat 16983180  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 451
Target Start/End: Complemental strand, 44957552 - 44957346
Alignment:
Q  246 accgaagagattactaagacgagtcgtagactagttagatgtctttatgacgttttgtggtagtgtctaaaattttgcaaacagactatcaatcaagaca 345  Q
    |||||||||||||||| |  ||||| | |||||| | | | |||||| |||||||||||| | ||   |||||| ||||| ||||||||||| || ||||    
T  44957552 accgaagagattactaggctgagtcatggactaggtcgttctctttaagacgttttgtggcactgcaaaaaattgtgcaagcagactatcaaccacgaca 44957453  T
Q  346 tccatatgataaaatagcacaactaaaact-tatcggagtcctactacactgtagaatccgttttagaaatacaacctcaaatatggtgttaagaccact 444  Q
    ||   | ||||||| ||  |  ||| |||| |||| |||||||| | |||| || |||| ||| |||||||||| | |||||||||||| ||||||||||    
T  44957452 tctccaggataaaacagtcctgctacaactgtatcagagtcctattgcactatataatctgttctagaaatacaccttcaaatatggtgctaagaccact 44957353  T
Q  445 ataatat 451  Q
     ||||||    
T  44957352 ctaatat 44957346  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 457
Target Start/End: Complemental strand, 171828 - 171619
Alignment:
Q  248 cgaagagattactaagacgagtcgtagactagttagatgtctttatgacgttttgtggtagtgtctaaaattttgcaaacagactatcaatcaagacatc 347  Q
    |||||||||||||| |  |||||| ||||||| | | | |||||| ||||||| |||| | || |||||||| ||||| ||||||||||| || ||| ||    
T  171828 cgaagagattactaggctgagtcgcagactaggtcgctctctttaagacgtttcgtggcactgcctaaaattgtgcaagcagactatcaaccacgacgtc 171729  T
Q  348 catatgataaaatagcacaactaaaact-tatcggagtcctactacactgtagaatccgttttagaaatacaacctcaaatatggtgttaagaccactat 446  Q
    | || ||||||| ||| |||||| |||| |||  || ||||| | |||| ||| ||| ||| |||||||||| | || ||||||||  ||||| ||||      
T  171728 c-taggataaaacagcccaactacaactgtataagaatcctattgcactataggatctgttctagaaatacaccttccaatatggttctaagatcactcc 171630  T
Q  447 aatatagtatt 457  Q
    ||||| |||||    
T  171629 aatatggtatt 171619  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 32815031 - 32814966
Alignment:
Q  392 cactgtagaatccgttttagaaatacaacctcaaatatggtgttaagaccactataatatagtatt 457  Q
    |||| ||| ||| ||| |||||||||| | |||||||||||| ||||||||||||||||| |||||    
T  32815031 cactataggatctgttctagaaatacaccttcaaatatggtgctaagaccactataatatggtatt 32814966  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 29610898 - 29610849
Alignment:
Q  378 tcggagtcctactacactgtagaatccgttttagaaatacaacctcaaat 427  Q
    ||||||||||||| |||||||| ||||||| |||||||||| | ||||||    
T  29610898 tcggagtcctactgcactgtaggatccgttatagaaatacaccttcaaat 29610849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 457
Target Start/End: Original strand, 35129676 - 35129820
Alignment:
Q  314 aaaattttgcaaacagactatcaatcaagacatccatatgataaaatagcacaactaaaact-tatcggagtcctactacactgtagaatccgttttaga 412  Q
    |||||| ||||| ||||||||||| || ||||||   | ||||||| ||  || ||| |||| |||| |||||||  | |||| ||| ||| ||| ||||    
T  35129676 aaaattgtgcaagcagactatcaaccacgacatcatcaggataaaacagtccagctacaactgtatcagagtccttttgcactataggatctgttctaga 35129775  T
Q  413 aatacaacctcaaatatggtgttaagaccactataatatagtatt 457  Q
    |||||| | |||||||||||| |||||||| | |||||| |||||    
T  35129776 aatacaccttcaaatatggtgctaagaccattctaatatggtatt 35129820  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 457
Target Start/End: Complemental strand, 23193202 - 23193126
Alignment:
Q  381 gagtcctactacactgtagaatccgttttagaaatacaacctcaaatatggtgttaagaccactataatatagtatt 457  Q
    |||||||| | |||| ||| ||| ||| |||||||||| | |||||||||||| |||||||||| |||||| |||||    
T  23193202 gagtcctattgcactataggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtatt 23193126  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 451
Target Start/End: Complemental strand, 28858110 - 28857972
Alignment:
Q  314 aaaattttgcaaacagactatcaatcaagacatccatatgataaaatagcacaactaaaact-tatcggagtcctactacactgtagaatccgttttaga 412  Q
    |||||| ||||| ||||||||||| || ||| |||  | ||||||||||| || |||||||| ||||  ||||||| | |||| ||| ||| | | ||||    
T  28858110 aaaattgtgcaagcagactatcaaccacgacgtccccaggataaaatagctcagctaaaactgtatcaaagtcctattgcactataggatctgctctaga 28858011  T
Q  413 aatacaacctcaaatatggtgttaagaccactataatat 451  Q
    |||||| | || |||||| |||||| |||||| ||||||    
T  28858010 aatacatcttccaatatgatgttaaaaccactctaatat 28857972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 340
Target Start/End: Original strand, 32987222 - 32987314
Alignment:
Q  248 cgaagagattactaagacgagtcgtagactagttagatgtctttatgacgttttgtggtagtgtctaaaattttgcaaacagactatcaatca 340  Q
    ||||||||||||||||  ||||||  |||||| |   | |||||| || ||||||||| | || |||||||| ||||| ||||||||||||||    
T  32987222 cgaagagattactaagctgagtcgcggactaggtcactctctttaagatgttttgtggcactgcctaaaattgtgcaagcagactatcaatca 32987314  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 36724852 - 36724900
Alignment:
Q  409 tagaaatacaacctcaaatatggtgttaagaccactataatatagtatt 457  Q
    |||||||||| | |||||||||||| |||||||||| |||||| |||||    
T  36724852 tagaaatacaccttcaaatatggtgctaagaccactctaatatggtatt 36724900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 442
Target Start/End: Complemental strand, 18265620 - 18265423
Alignment:
Q  246 accgaagagattactaagacgagtcgtagactagttagatgtctttatgacgttttgtggtagtgtctaaaattttgcaaacagactatcaatcaagaca 345  Q
    |||||||||||||||| |  |||| |  |||||| | | | |||||| |||||||||||  | || |||||||| ||||| ||||||||||| || |||     
T  18265620 accgaagagattactaggctgagtagcggactaggtcgctctctttaagacgttttgtgacactgcctaaaattgtgcaatcagactatcaaccacgacg 18265521  T
Q  346 tccatatgataaaatagcacaactaaaact-tatcggagtcctactacactgtagaatccgttttagaaatacaacctcaaatatggtgttaagacca 442  Q
    |||  ||||||||| ||| || ||| |||| |||| ||||| || |  ||| ||  ||| ||| |||||||||| | || ||||||||| ||||||||    
T  18265520 tccccatgataaaacagctcagctacaactgtatcagagtcttattgtactctatgatctgttatagaaatacaccttccaatatggtgctaagacca 18265423  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 444
Target Start/End: Original strand, 7145862 - 7145994
Alignment:
Q  313 taaaattttgcaaacagactatcaatcaagacatccatatgataaaatagcacaactaaaact-tatcggagtcctactacactgtagaatccgttttag 411  Q
    ||||||| ||||| |||||||||||  | |||| ||| |  |||||| ||| || ||| |||| ||||||||||||||| || ||||| ||  ||| |||    
T  7145862 taaaattgtgcaagcagactatcaactacgacacccacagaataaaacagctcagctacaactgtatcggagtcctactgcattgtaggatatgttctag 7145961  T
Q  412 aaatacaacctcaaatatggtgttaagaccact 444  Q
    ||||||| | | | |||||||||||| ||||||    
T  7145962 aaatacacctttagatatggtgttaaaaccact 7145994  T

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