View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16811_low_10 (Length: 373)

Name: NF16811_low_10
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16811_low_10
NF16811_low_10
[»] chr2 (6 HSPs)
chr2 (72-356)||(615219-615503)
chr2 (82-155)||(41514956-41515029)
chr2 (83-155)||(5197850-5197922)
chr2 (82-154)||(38695375-38695447)
chr2 (83-154)||(4824236-4824307)
chr2 (82-155)||(41702218-41702291)
[»] chr8 (7 HSPs)
chr8 (82-155)||(10739711-10739784)
chr8 (82-155)||(35485392-35485465)
chr8 (82-155)||(36100759-36100832)
chr8 (82-154)||(9819669-9819741)
chr8 (82-155)||(36020482-36020555)
chr8 (82-153)||(6057515-6057586)
chr8 (177-224)||(20107847-20107894)
[»] chr5 (3 HSPs)
chr5 (82-155)||(42461226-42461299)
chr5 (83-155)||(12694512-12694584)
chr5 (83-152)||(12694216-12694285)
[»] chr4 (2 HSPs)
chr4 (82-155)||(30514362-30514435)
chr4 (82-154)||(38872578-38872650)
[»] chr3 (3 HSPs)
chr3 (82-155)||(34575494-34575567)
chr3 (83-155)||(24833093-24833165)
chr3 (83-155)||(49766563-49766635)
[»] chr1 (3 HSPs)
chr1 (82-155)||(23775165-23775238)
chr1 (82-154)||(43467536-43467608)
chr1 (85-151)||(43466644-43466710)
[»] scaffold0350 (1 HSPs)
scaffold0350 (82-153)||(16940-17011)
[»] scaffold0016 (1 HSPs)
scaffold0016 (93-136)||(38511-38554)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 72 - 356
Target Start/End: Complemental strand, 615503 - 615219
Alignment:
Q  72 attaaaaatgatgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgctgcttgatacataaatt 171  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  615503 attaaaaatgctgcgtttgccgggagtcgaacccggatctattgcttggaaggcaattatcctaaccgttggactacaaacgctacttgagacataaatt 615404  T
Q  172 ctaattttctactgatatatcagtttgcttgagaaggatcctttccatatcaatggctttgtatcnnnnnnnactactatgaagattatcattacgagtc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||| ||    
T  615403 ctaattttctactgatatatcagtttgcttgagaaggatcctttccatatcaatggctttatatctttttttactactatgaagattatcattacgactc 615304  T
Q  272 aaatattcttgagctttggtatttaatgaactacggtgcataaaataagaaagaaccatccataaaataatcatagtttcttttt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  615303 aaatattcttgagctttggtatttaatgaactacggtgcataaaataagaaaaaaccgtccataaaataatcttagtttcttttt 615219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 41515029 - 41514956
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41515029 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 41514956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 5197850 - 5197922
Alignment:
Q  83 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5197850 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 5197922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 38695447 - 38695375
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgc 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38695447 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgc 38695375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 4824236 - 4824307
Alignment:
Q  83 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgc 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4824236 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgc 4824307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 41702218 - 41702291
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702218 atgcgtttgccgggagtcaaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 41702291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 10739784 - 10739711
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10739784 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 10739711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 35485465 - 35485392
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35485465 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 35485392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 36100759 - 36100832
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36100759 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 36100832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 9819669 - 9819741
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgc 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9819669 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgc 9819741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 36020482 - 36020555
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36020482 atgcgtttgccaggagtcgaacccaggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 36020555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 6057515 - 6057586
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacg 153  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||| |||||||||||||||    
T  6057515 atgcgtttgccgggagtctaacccaggtctattgcttggaaggcaattattccaactgttggactacaaacg 6057586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 20107894 - 20107847
Alignment:
Q  177 tttctactgatatatcagtttgcttgagaaggatcctttccatatcaa 224  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||    
T  20107894 tttctactgataatacagtttgcttgagaaggatcctttccatatcaa 20107847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 42461226 - 42461299
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42461226 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 42461299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 12694512 - 12694584
Alignment:
Q  83 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12694512 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 12694584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 12694216 - 12694285
Alignment:
Q  83 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaac 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12694216 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaac 12694285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 30514435 - 30514362
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30514435 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 30514362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 38872578 - 38872650
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgc 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38872578 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgc 38872650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 34575494 - 34575567
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34575494 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 34575567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 24833093 - 24833165
Alignment:
Q  83 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24833093 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 24833165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 49766563 - 49766635
Alignment:
Q  83 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766563 tgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 49766635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 23775238 - 23775165
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23775238 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgct 23775165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 43467608 - 43467536
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacgc 154  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43467608 atgcgtttgccgggagtcgaacccaggtctattgcttggaaggcaattatcctaaccgttggactacaaacgc 43467536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 43466710 - 43466644
Alignment:
Q  85 cgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaa 151  Q
    |||||| ||| | ||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  43466710 cgtttgtcggaaatcgaacctgggtctaatgcttagaaggcaattatcctaaccattggactacaaa 43466644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 16940 - 17011
Alignment:
Q  82 atgcgtttgccgggagtcgaacccgggtctattgcttggaaggcaattatcctaaccgttggactacaaacg 153  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||| |||||||||||||||    
T  16940 atgcgtttgccgggagtctaacccaggtctattgcttggaaggcaattattccaactgttggactacaaacg 17011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 38511 - 38554
Alignment:
Q  93 gggagtcgaacccgggtctattgcttggaaggcaattatcctaa 136  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  38511 gggagttgaacccgggtctattgcttggaaggcaattgtcctaa 38554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University