View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16811_low_14 (Length: 342)

Name: NF16811_low_14
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16811_low_14
NF16811_low_14
[»] chr2 (3 HSPs)
chr2 (195-328)||(8086626-8086759)
chr2 (61-197)||(7395555-7395691)
chr2 (5-58)||(8086577-8086630)
[»] chr6 (2 HSPs)
chr6 (61-197)||(4460236-4460372)
chr6 (56-192)||(17993442-17993578)
[»] chr4 (5 HSPs)
chr4 (61-197)||(53791155-53791291)
chr4 (58-192)||(44769853-44769989)
chr4 (64-147)||(11392771-11392854)
chr4 (64-147)||(11402498-11402581)
chr4 (96-147)||(48830623-48830674)
[»] chr3 (2 HSPs)
chr3 (61-192)||(22489734-22489865)
chr3 (116-148)||(19884717-19884749)
[»] chr1 (1 HSPs)
chr1 (61-197)||(45529506-45529642)
[»] chr7 (1 HSPs)
chr7 (62-141)||(15568864-15568943)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 195 - 328
Target Start/End: Original strand, 8086626 - 8086759
Alignment:
Q  195 acttaaactaattcaaattgttttgctaattaacaaaaattatctactagacaaggcaaaatcaattgtttttgtttgtattttgcatgtggtattgatt 294  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8086626 acttaaactaattcagattgttttgctaattaacaaaaattatctactcgacaaggcaaaatcaattgtttttgtttgtattttgcatgtggtattgatt 8086725  T
Q  295 tattagtagttgtcatatgtttaaagtgaacagt 328  Q
    | ||||||||||||||||||||||||||||||||    
T  8086726 tgttagtagttgtcatatgtttaaagtgaacagt 8086759  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 7395555 - 7395691
Alignment:
Q  61 acctgtttggtacagcggtggagtagcattttccacgtcccaagacattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacggca 160  Q
    |||||||||||||||||||| | ||||||||||| | |||| || ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||     
T  7395555 acctgtttggtacagcggtgtattagcattttccgcatcccgaggcattttgaaagtgaaaataaagaagctaccatttgtagcttttgtgcaaacggcg 7395654  T
Q  161 ttttttcctattttcaccggtacaacaaacacatact 197  Q
    |||||| |||||| |||||   |||||||||| ||||    
T  7395655 tttttttctatttccaccgccgcaacaaacacgtact 7395691  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 8086577 - 8086630
Alignment:
Q  5 ctaaattattctatctgattaccatttcacattactattaaataaacagactta 58  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  8086577 ctaaattattttatctgattaccatttcaaattactattaaataaacagactta 8086630  T

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Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 4460372 - 4460236
Alignment:
Q  61 acctgtttggtacagcggtggagtagcattttccacgtcccaagacattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacggca 160  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  4460372 acctgtttggtacagcggtgtagtagcattttccacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgcaaacggcg 4460273  T
Q  161 ttttttcctattttcaccggtacaacaaacacatact 197  Q
    |||||||||||||  ||||||||||||||||||||||    
T  4460272 ttttttcctatttctaccggtacaacaaacacatact 4460236  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 17993442 - 17993578
Alignment:
Q  56 ttagtacctgtttggtacagcggtggagtagcattttccacgtcccaagacattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaa 155  Q
    |||||||||||||||||||||| || | ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||    
T  17993442 ttagtacctgtttggtacagcgatgtattagcattttccgcgtcccaaggcgttttgaacgtgaaaataaagaagctaccttttgaagcttttgtgcaaa 17993541  T
Q  156 cggcattttttcctattttcaccggtacaacaaacac 192  Q
    |||| |||||| |||||| ||||| ||||||||||||    
T  17993542 cggcgtttttttctatttccaccgctacaacaaacac 17993578  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 53791155 - 53791291
Alignment:
Q  61 acctgtttggtacagcggtggagtagcattttccacgtcccaagacattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacggca 160  Q
    |||||||||||||||||||| | |||||||||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||     
T  53791155 acctgtttggtacagcggtgtattagcattttccacgtcccgaggcattttgaaagtgaaaataaagaagctaccatttgtagcttttgtgcaaacggcg 53791254  T
Q  161 ttttttcctattttcaccggtacaacaaacacatact 197  Q
    |||||| |||||| |||||  ||||||||||| ||||    
T  53791255 tttttttctatttccaccgccacaacaaacacgtact 53791291  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 44769989 - 44769853
Alignment:
Q  58 agtacctgtttggtacagcggtggagtagcattttccacgtcccaagacattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacg 157  Q
    ||||||||||||||||| ||||| | ||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||  |||||    
T  44769989 agtacctgtttggtacaacggtgtattagcattttccacgttccgagacattttgaacgtgaaaataaagaagttaccttttgtagcttttgtacaaacg 44769890  T
Q  158 --gcattttttcctattttcaccggtacaacaaacac 192  Q
      |  |||||| |||||| ||||| ||||||||||||    
T  44769889 ccgtttttttttctatttccaccgctacaacaaacac 44769853  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 11392771 - 11392854
Alignment:
Q  64 tgtttggtacagcggtggagtagcattttccacgtcccaagacattttgaacgtgaaaataaagaagctaccttttgtagcttt 147  Q
    ||||||| | ||||||||| | ||||||| | ||||||||||||  |  ||||||||||| |||||||||| ||||||||||||    
T  11392771 tgtttggaatagcggtggatttgcatttttcgcgtcccaagacagatataacgtgaaaatgaagaagctacattttgtagcttt 11392854  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 11402498 - 11402581
Alignment:
Q  64 tgtttggtacagcggtggagtagcattttccacgtcccaagacattttgaacgtgaaaataaagaagctaccttttgtagcttt 147  Q
    ||||||| | ||||||||| | ||||||| | ||||||||||||  |  ||||||||||| |||||||||| ||||||||||||    
T  11402498 tgtttggaatagcggtggatttgcatttttcgcgtcccaagacagatataacgtgaaaatgaagaagctacattttgtagcttt 11402581  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 48830623 - 48830674
Alignment:
Q  96 cgtcccaagacattttgaacgtgaaaataaagaagctaccttttgtagcttt 147  Q
    |||||| |||| | ||||||||||||||||||||| | ||||||||||||||    
T  48830623 cgtcccgagacttattgaacgtgaaaataaagaagttgccttttgtagcttt 48830674  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 22489865 - 22489734
Alignment:
Q  61 acctgtttggtacagcggtggagtagcattttccacgtcccaagacattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacggca 160  Q
    |||||||||||||||||||| | ||||||||||| |||||| || |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||     
T  22489865 acctgtttggtacagcggtgtattagcattttccgcgtcccgaggcattttgaacatgaaaataaagaagctaccttttctagcttttgtgcaaacggcg 22489766  T
Q  161 ttttttcctattttcaccggtacaacaaacac 192  Q
    |||||| |||||| |||||  |||||||||||    
T  22489765 tttttttctatttccaccgccacaacaaacac 22489734  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 19884749 - 19884717
Alignment:
Q  116 gtgaaaataaagaagctaccttttgtagctttt 148  Q
    |||||||||||||||||| ||||||||||||||    
T  19884749 gtgaaaataaagaagctaacttttgtagctttt 19884717  T

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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 45529642 - 45529506
Alignment:
Q  61 acctgtttggtacagcggtggagtagcattttccacgtcccaagacattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacggca 160  Q
    |||||||||||||||||||| | ||||||||||| | |||| || ||||||||| |||||||||||||||||| | ||| ||||||||||| |||||||     
T  45529642 acctgtttggtacagcggtgtattagcattttccgcatcccgaggcattttgaaagtgaaaataaagaagctaacatttatagcttttgtgcaaacggcg 45529543  T
Q  161 ttttttcctattttcaccggtacaacaaacacatact 197  Q
    |||||| |||||| |||||  ||||||||||| ||||    
T  45529542 tttttttctatttccaccgccacaacaaacacgtact 45529506  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 15568943 - 15568864
Alignment:
Q  62 cctgtttggtacagcggtggagtagcattttccacgtcccaagacattttgaacgtgaaaataaagaagctaccttttgt 141  Q
    |||||||||||||| |||| | ||| ||||||| |||||| || | ||||||||||||||||||||||| ||||||||||    
T  15568943 cctgtttggtacagtggtgtattagaattttccgcgtcccgaggcgttttgaacgtgaaaataaagaagttaccttttgt 15568864  T

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