View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16811_low_19 (Length: 322)

Name: NF16811_low_19
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16811_low_19
NF16811_low_19
[»] chr3 (3 HSPs)
chr3 (1-288)||(34760908-34761195)
chr3 (239-288)||(25447298-25447347)
chr3 (126-190)||(44014714-44014778)
[»] chr1 (3 HSPs)
chr1 (219-288)||(9572142-9572211)
chr1 (243-287)||(3495693-3495737)
chr1 (239-288)||(48830130-48830179)
[»] chr7 (3 HSPs)
chr7 (175-258)||(25422347-25422431)
chr7 (239-288)||(20526413-20526462)
chr7 (239-288)||(22283798-22283847)
[»] chr6 (2 HSPs)
chr6 (218-288)||(1402963-1403033)
chr6 (239-288)||(2735036-2735085)
[»] chr8 (3 HSPs)
chr8 (47-80)||(29356723-29356756)
chr8 (126-190)||(16162850-16162914)
chr8 (206-262)||(29592194-29592250)
[»] chr5 (1 HSPs)
chr5 (239-288)||(26516367-26516416)
[»] chr4 (2 HSPs)
chr4 (236-285)||(28300350-28300399)
chr4 (142-225)||(7367986-7368070)
[»] chr2 (1 HSPs)
chr2 (243-287)||(44439418-44439462)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 34761195 - 34760908
Alignment:
Q  1 tcagagttgcttaagttaagaagaatcagaactcacctcatgaaaatcaataagcctgctgtgaagacaattcaggcatgcatttttcttttctctataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34761195 tcagagttgcttaagttaagaagaatcagaactcacctcatgaaaatcaataagcctgctgtgaagacaattcaggcatgcatttttcttttctctataa 34761096  T
Q  101 ccagtggcagtgttactgatattttgcctctttggattagattatttgagtttatatactgtcgtaaacattcgtgagactgtttgagaaggtcatggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34761095 ccagtggcagtgttactgatattttgcctctttggattagattatttgagtttatatactgtcgtaaacattcgtgagactgtttgagaaggtcatggaa 34760996  T
Q  201 acaatttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  34760995 acaatttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagcttatataaacatagtttaactttattttatc 34760908  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 25447298 - 25447347
Alignment:
Q  239 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 288  Q
    ||||||||||||||||||||||||||||   | ||||| |||||||||||    
T  25447298 tatgaaaacagtttatagcttatacaaaaacaatttaagtttattttatc 25447347  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 44014714 - 44014778
Alignment:
Q  126 gcctctttggattagattatttgagtttatatactgtcgtaaacattcgtgagactgtttgagaa 190  Q
    |||| |||||||| | |||||||||||||| ||||  | |||||| | |||||||||||||||||    
T  44014714 gcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaa 44014778  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 9572142 - 9572211
Alignment:
Q  219 ataagctctcagtgatcgcctatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 288  Q
    ||||| ||||| |||| || ||||||||| | |||||||||||||||| | | |||||||||||||||||    
T  9572142 ataagttctcaatgatggcatatgaaaacggcttatagcttatacaaaagcaatttaactttattttatc 9572211  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 3495693 - 3495737
Alignment:
Q  243 aaaacagtttatagcttatacaaacgtagtttaactttattttat 287  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||||    
T  3495693 aaaacaatttataggttatacaaacgtaatttaactttattttat 3495737  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 48830130 - 48830179
Alignment:
Q  239 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 288  Q
    ||||||||||||||||||||||||  ||  |||||| |||||||||||||    
T  48830130 tatgaaaacagtttatagcttatatgaaaatagtttgactttattttatc 48830179  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 25422431 - 25422347
Alignment:
Q  175 tgagactgtttgaga-aggtcatggaaacaatttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagct 258  Q
    |||||||||||| || || | |||||||||  ||||||||||||||||| |||||  |||| |||| |||||||| |||||||||    
T  25422431 tgagactgtttgggagagcttatggaaacaccttatgacatgtttataaactctccatgatagcctgtgaaaacaatttatagct 25422347  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 20526462 - 20526413
Alignment:
Q  239 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 288  Q
    ||||||||||| ||||||| | ||||||| || |||||||||||||||||    
T  20526462 tatgaaaacagcttatagcatgtacaaacataatttaactttattttatc 20526413  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 22283798 - 22283847
Alignment:
Q  239 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 288  Q
    |||||||||||||||||||| |||||||   | |||||||||||||||||    
T  22283798 tatgaaaacagtttatagctgatacaaaaacaatttaactttattttatc 22283847  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 1403033 - 1402963
Alignment:
Q  218 tataagctctcagtgatcgcctatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 288  Q
    |||||| ||||  |||| || |||||||||| |||||||||||||  ||  ||||||||||||||||||||    
T  1403033 tataagatctccatgatagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatc 1402963  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 2735085 - 2735036
Alignment:
Q  239 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 288  Q
    ||||||||||| |||||| |||||||||  || |||||||||||||||||    
T  2735085 tatgaaaacagcttatagattatacaaaaataatttaactttattttatc 2735036  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 29356723 - 29356756
Alignment:
Q  47 tcaataagcctgctgtgaagacaattcaggcatg 80  Q
    |||||||||||||||| |||||||||||||||||    
T  29356723 tcaataagcctgctgttaagacaattcaggcatg 29356756  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 16162914 - 16162850
Alignment:
Q  126 gcctctttggattagattatttgagtttatatactgtcgtaaacattcgtgagactgtttgagaa 190  Q
    |||| |||||||| | |||||||||||||| ||||  | |||||| | |||||||||||||||||    
T  16162914 gcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaa 16162850  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 29592194 - 29592250
Alignment:
Q  206 ttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagcttata 262  Q
    |||||||||||  |||||||||| | ||| || ||||||||||| ||||||||||||    
T  29592194 ttatgacatgtccataagctctctgggatagcttatgaaaacagattatagcttata 29592250  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 26516416 - 26516367
Alignment:
Q  239 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 288  Q
    ||||||||||||||||| ||||||  || ||||||| |||||||||||||    
T  26516416 tatgaaaacagtttataacttatatgaaagtagtttgactttattttatc 26516367  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 28300350 - 28300399
Alignment:
Q  236 gcctatgaaaacagtttatagcttatacaaacgtagtttaactttatttt 285  Q
    ||||||||||| |||||||||||||||||||   | ||||||||||||||    
T  28300350 gcctatgaaaatagtttatagcttatacaaaaacaatttaactttatttt 28300399  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 7367986 - 7368070
Alignment:
Q  142 ttatttgagtttatatactgtcgtaaacattcgtgagactgtttgaga-aggtcatggaaacaatttatgacatgtttataagct 225  Q
    |||||||||||||| ||| | | |||||  | ||||||||||||| || || ||||| |||||  ||||||||||||||||||||    
T  7367986 ttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgacatgtttataagct 7368070  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 44439418 - 44439462
Alignment:
Q  243 aaaacagtttatagcttatacaaacgtagtttaactttattttat 287  Q
    |||||| |||||||||||||||||   ||||||||||||||||||    
T  44439418 aaaacaatttatagcttatacaaaaacagtttaactttattttat 44439462  T

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