View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16811_low_2 (Length: 923)
Name: NF16811_low_2
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16811_low_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 854; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 854; E-Value: 0
Query Start/End: Original strand, 1 - 909
Target Start/End: Complemental strand, 32169377 - 32168470
Alignment:
| Q |
1 |
tcaaagacgcctaaactccctttgttgatcacaaaactttttaaaaccttgccttgtaatacttgtttgagatttctcaaaaacctaagacaagatgcta |
100 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32169377 |
tcaaagacgtctaaactccctttgttgatcacaaaactttttaaaacattgccttgtaatacttgtttgagatttctcaaaaacctaagacaagatgcta |
32169278 |
T |
|
| Q |
101 |
acgtggattttgtactagttttaagttggatatcttggaactccaaattcaacatgcatggtggaatttaggaattgtgaaccaaaaaataaagaagact |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32169277 |
acgtggattttgtactagttttaagttggatatcttggaactccaaattcaacatgcatggtggaatttaggaattgtgaaccaaaaaataaagaagact |
32169178 |
T |
|
| Q |
201 |
tcttttaatggttacaaatttgaatgtttgaaactctttctttgaaagtaaccatttctaatactattcatcaaacaactaaatcaagcaaatgcaactg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32169177 |
tcttttaatggttacaaatttgaatgtttgaaactctttctttgaaagtaacaatttctaatactattcatcaaacaactaaatcaagcaaatgcaactg |
32169078 |
T |
|
| Q |
301 |
aaaacaaaacaatcgtgtaaaattggaacaaatctttactcattaagaatacaaatggcacaaccaaggaaattttcttggcatgtgtgtgtattacaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32169077 |
aaaacaaaacaatcgtgtaaaattggaacaaatctttactcattaagaatacaaatggcacaaccaaggaaattttcttggcatgtgtgtgtattacaat |
32168978 |
T |
|
| Q |
401 |
tnnnnnnnnnntgtagaagtgttaatatttccttagtcaaacccataatccaccacttgacaaagggattcatattgataaacctcactatgatcaaatg |
500 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32168977 |
taaaaaaaaa-tgtagaagtgttaatatttccttagtcaaacccataatccaccacttgacaaagggattcatattgataaacctcactatgatcaaatg |
32168879 |
T |
|
| Q |
501 |
tgccaagcccttccttctcatcatggttttaaatgcagtcgcgattgcggttacactgcaaacttttatattgtggaaaaatggagaaaaatgtagccaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32168878 |
tgccaagcccttccttctcatcatggttttaaatgcagtcgcgattgcggttacactgcaaacttttatattgtggaaaaatggagaaaaatgtagccaa |
32168779 |
T |
|
| Q |
601 |
tgcgatcgaaattgcaaagacctagaaatcctttatatttgcggttgcagactgcaatttaaaaccatacttcttatctgatcaatgaagtaagaaactc |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32168778 |
tgcgatcgaaattgcaaagacctagaaatcctttatatttgcggttgcagactgcaatttaaaaccatacttcttatctgatcaatgaagtaagaaactc |
32168679 |
T |
|
| Q |
701 |
gaaagcaacttcatcacaaggaatggtaaggcccatgtcatgattgaagccaaattcctcctcagctctttgaagcaatctttgaaattgtggatgaggc |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32168678 |
gaaagcaacttcatcacaaggaatggtaaggcccatgtcatgattgaagccaaattcctcctcagctctttgaagcaatctttgaaattgtggatgaggc |
32168579 |
T |
|
| Q |
801 |
aaccatgaaattggaacaatatatcttgttctattttctccaacataaacaacaaaatgaccttttggtacatcttcaggaagattctcttcattgtaac |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32168578 |
aaccatgaaattggaacaatatatcttgttctattttctccaacataaacaacaaaatgaccttttggtacatcttcaggaagactctcttcattgtaac |
32168479 |
T |
|
| Q |
901 |
cattattct |
909 |
Q |
| |
|
|||| |||| |
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|
| T |
32168478 |
catttttct |
32168470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 707 - 900
Target Start/End: Original strand, 8510665 - 8510858
Alignment:
| Q |
707 |
aacttcatcacaaggaatggtaaggcccatgtcatgattgaagccaaattcctcctcagctctttgaagcaatctttgaaattgtggatgaggcaaccat |
806 |
Q |
| |
|
||||||||||||||| || ||||| ||||| |||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||| | |||||| |
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| T |
8510665 |
aacttcatcacaagggatagtaagtcccatatcatgattgaagccaaattcatcttcagctctttgtagcaaactttgaaattgaggatgtgccaaccaa |
8510764 |
T |
|
| Q |
807 |
gaaattggaacaatatatcttgttctattttctccaacataaacaacaaaatgaccttttggtacatcttcaggaagattctcttcattgtaac |
900 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
8510765 |
gaaattggaataatgtatcttgttctattctctccaacataaactacaaaatgaccttttggtacatcctcaggaagaccctcttcattgtaac |
8510858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 581
Target Start/End: Original strand, 24913940 - 24913976
Alignment:
| Q |
545 |
ttgcggttacactgcaaacttttatattgtggaaaaa |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24913940 |
ttgcggttacactgcaaacttttatattgtggtaaaa |
24913976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 706 - 874
Target Start/End: Original strand, 55072216 - 55072384
Alignment:
| Q |
706 |
caacttcatcacaaggaatggtaaggcccatgtcatgattgaagccaaattcctcctcagctctttgaagcaatctttgaaattgtggatgaggcaacca |
805 |
Q |
| |
|
||||||| | |||||||||||| || |||||||| |||| ||||||||||| || |||||| | |||| | | |||||||| || |||| || | |
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| T |
55072216 |
caacttcttgacaaggaatggtgagtcccatgtcgtgatcaaagccaaattcttcttcagcttgtcgaaggagtgactgaaattgagggtgagttaagaa |
55072315 |
T |
|
| Q |
806 |
tgaaattggaacaatatatcttgttctattttctccaacataaacaacaaaatgaccttttggtacatc |
874 |
Q |
| |
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||| ||||| ||||||||||| |||| ||||| |||||||||||| |||||||||||||||| ||||| |
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| T |
55072316 |
tgagattggtacaatatatctgcttctgttttcaccaacataaacagcaaaatgaccttttgggacatc |
55072384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 582
Target Start/End: Complemental strand, 12155943 - 12155904
Alignment:
| Q |
543 |
gattgcggttacactgcaaacttttatattgtggaaaaat |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
12155943 |
gattgcggttacactgcaaacttttatattgcggcaaaat |
12155904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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