View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16811_low_29 (Length: 224)
Name: NF16811_low_29
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16811_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 55 - 206
Target Start/End: Complemental strand, 31849403 - 31849250
Alignment:
| Q |
55 |
gttatacatttggcattttgtagctttccatttggggcagagagtgcaacatctct--gaggagcgagcattgggattatagactgacattattttgtag |
152 |
Q |
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| T |
31849403 |
gttatacatttggcattttgtagctttctatttggggctgacagtgcaacatctctctgaggagcgagcattgggattatagactgacattattttgtag |
31849304 |
T |
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| Q |
153 |
cttcatgtttttcaataaaaatacatataaactttttctttgggtgaatatcat |
206 |
Q |
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| T |
31849303 |
cttcatgtttttcaataaaaatacatataaactttttcattgggtgaatatcat |
31849250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 31851024 - 31850982
Alignment:
| Q |
19 |
cagagacaagattgacagaaagaagaaggatgatatgttatac |
61 |
Q |
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| T |
31851024 |
cagagacaagattgacagaaagaagaaggatgatatgttatac |
31850982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 11469406 - 11469247
Alignment:
| Q |
55 |
gttatacattt-ggcattttgtagctttccatttggggcagagagtgcaacatctct--gaggagcg-agcattgggattatagactgacattattttgt |
150 |
Q |
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||||||||||| |||||| || || ||| || || ||||||||||| || ||||||| ||||||| ||| ||| ||||||| | ||||| ||| ||| |
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| T |
11469406 |
gttatacattttggcattgtgcagattttcacttagggcagagagtacaccatctctacgaggagcttagctttgacattataggcagacataattctgt |
11469307 |
T |
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| Q |
151 |
agcttcatgtttttcaataaaaatacatataaactttttctttgggtgaatatcattttt |
210 |
Q |
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| T |
11469306 |
aacttgatttttttcagtaaaaatacaaacacactttttctttgggtcaatatcattttt |
11469247 |
T |
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