View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16811_low_3 (Length: 892)
Name: NF16811_low_3
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16811_low_3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 799; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 799; E-Value: 0
Query Start/End: Original strand, 1 - 892
Target Start/End: Original strand, 17386915 - 17387806
Alignment:
| Q |
1 |
aaacatcaacatattttgaatgtaggaagagcattattaattcaaccaaatttaccaaaaaatttctggtcatatgctgtttctcatgctgtgttcatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
17386915 |
aaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaacatttctagtcatatgctgtttctcatgttgtgttcatta |
17387014 |
T |
|
| Q |
101 |
taaatagagtatctagtcctgtacttcaaaattattctccatattttttgttaaaaggcaccttgcctaacttgcatactttaaaagtttttggatcttt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17387015 |
taaatagagtacctagtcctgtacttcaaaatcattctccatattttttgttaaaaggcacattgcctgacttgcatactttaaaagtttttggatcttt |
17387114 |
T |
|
| Q |
201 |
agtttttgctttcactttattgtcacataggactaaacttactcctagagcaagaaaatgtannnnnnnaggctataaagctggagtaaaaggtgctgta |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
17387115 |
agtttttgcttccactttattgtcacataggactaaacttactcatagagcaagaaaatgtatttttttaggctataaagctggagtaaaaggtgcagta |
17387214 |
T |
|
| Q |
301 |
ctgcttgacattaataacaaagagattttagtgtctagaaatattagccaccatgaacatattcttccttacaaacaaaactcacaaactgttgcatgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17387215 |
ctgcttgacattaataacaaagagattttagtgtctagaaatattagccaccatgaacatattcttccttacaaacaaaactcacaaactgttgcatgga |
17387314 |
T |
|
| Q |
401 |
attaccatcctatcaccattaacaatgatcctacatcacaagttgaaccacaaaacatcaataattcacctcaaaattttgaaactgttgtgcatacacc |
500 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17387315 |
attaccatcctatcacctttaacaatgatcctacatcacaagttgaaccacaaaacatcaataattcacctcaaaattttgaaactgttgtgcatacacc |
17387414 |
T |
|
| Q |
501 |
acccacatctcaaaatatctctgacaggtctgcacctatacatataccaccattttctcaaaacagacctattagacaaagaaaaactccaccacatttg |
600 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17387415 |
actcacatctcaaaatatctctgacaggtctgcacctatacatataccacccttttctcaaaacaaacctattagacaaagaaaaactccaccacatttg |
17387514 |
T |
|
| Q |
601 |
gcagactatgtttgtgagaatctatctgtcaacatagcagaaccagtcaactcaggtactctttatcctctaaattcttttcattcactcacacacttgt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17387515 |
gcagactatgtttgtgagaatctatctgtcaacatagcagaaccagtcaactcaggtactctttatcctctaaattcttttcattcactcacacacttgt |
17387614 |
T |
|
| Q |
701 |
ctccttcacacaaggcatttagtatgtctatcacacactgcactgagcctcaaacctatcaagaagctagtaagtctgaatgttgggtacttgctatgaa |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17387615 |
ctccttcacacaaggcatttagtatgtctatcacacactgcactgagcctcaaacctatcaagaagctagtaagtctgaatgttgggtacttgctatgaa |
17387714 |
T |
|
| Q |
801 |
agatgaattagaagcccttgaaagaaatggcacgtggagtattgttgatttgcctcagaatgtgaagcccataggcaacaaatgggtatata |
892 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17387715 |
agatgaattagaagcccttgaaagaaatggcacatggagtattgttgatttgccctagaatgtgaagcccataggcaacaaatgggtatata |
17387806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 15537184 - 15537665
Alignment:
| Q |
1 |
aaacatcaacatattttgaatgtaggaagagcattattaattcaaccaaatttaccaaaaaatttctggtcatatgctgtttctcatgctgtgttcatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |||||||||| |||||||||||| |
|
|
| T |
15537184 |
aaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaacatttttggtcatatgatgtttctcatactgtgttcatta |
15537283 |
T |
|
| Q |
101 |
taaatagagtatctagtcctgtacttcaaaattattctccatattttttgttaaaaggcaccttgcctaacttgcatactttaaaagtttttggatcttt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15537284 |
taaatagagtacctagtcctgtacttcaaaatcattctccatattttttgttaaaaggcacattgcctgacttgcatactttaaaagtttttggatcttt |
15537383 |
T |
|
| Q |
201 |
agtttttgctttcactttattgtcacataggactaaacttactcctagagcaagaaaatgtannnnnnnaggctataaagctggagt-aaaaggtgctgt |
299 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
15537384 |
agtttttgcttccactttattgtcacataggattaatcttactcctagagcaagaaaatgtatttttttaggctataaagctggagtaaaaaggtgcagt |
15537483 |
T |
|
| Q |
300 |
actgcttgacattaataacaaagagattttagtgtctagaaatattagccaccatgaacatattcttccttacaaacaaaactcacaaactgttgcatgg |
399 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15537484 |
actgtttgacattaataacaaagagattttagtgtctagaaatattagccaccatgaacatattcttccttacaaacaaaactcacaaactgttgcatgg |
15537583 |
T |
|
| Q |
400 |
aattaccatcctatcaccattaacaatgatcctacatcacaagttgaaccacaaaacatcaataattcacctcaaaattttg |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15537584 |
aattaccatcctatcaccattaacaatgatcctacatcacaagttgaaccacaaaacatcaataattcacctcaaaattttg |
15537665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 723 - 815
Target Start/End: Original strand, 33460523 - 33460615
Alignment:
| Q |
723 |
tatgtctatcacacactgcactgagcctcaaacctatcaagaagctagtaagtctgaatgttgggtacttgctatgaaagatgaattagaagc |
815 |
Q |
| |
|
||||||| ||||||| || |||||||| |||||||| ||||||||||| |||||||||||||| || |||||| || |||||||||||| |
|
|
| T |
33460523 |
tatgtctgtcacacaatgtactgagccaaaaacctataaagaagctagtcagtctgaatgttggttaaaagctatggaatctgaattagaagc |
33460615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 723 - 815
Target Start/End: Original strand, 34824680 - 34824772
Alignment:
| Q |
723 |
tatgtctatcacacactgcactgagcctcaaacctatcaagaagctagtaagtctgaatgttgggtacttgctatgaaagatgaattagaagc |
815 |
Q |
| |
|
||||||| ||||||| || |||||||| ||||||| ||||||||||| |||||||||||||| || |||||| || |||||||||||| |
|
|
| T |
34824680 |
tatgtctgtcacacaatgtactgagccaaaaacctacaaagaagctagtcagtctgaatgttggttaaaagctatggaatctgaattagaagc |
34824772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 723 - 815
Target Start/End: Original strand, 2997386 - 2997478
Alignment:
| Q |
723 |
tatgtctatcacacactgcactgagcctcaaacctatcaagaagctagtaagtctgaatgttgggtacttgctatgaaagatgaattagaagc |
815 |
Q |
| |
|
||||||| ||||||| || |||||||| ||||||| ||||||||||| |||||||||||||| || |||||| || |||||||||||| |
|
|
| T |
2997386 |
tatgtctgtcacacaatgtactgagccaaaaacctacaaagaagctagtcagtctgaatgttggttaaaagctatggaatctgaattagaagc |
2997478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 786
Target Start/End: Original strand, 37192960 - 37193023
Alignment:
| Q |
723 |
tatgtctatcacacactgcactgagcctcaaacctatcaagaagctagtaagtctgaatgttgg |
786 |
Q |
| |
|
||||||| ||||||| || |||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
37192960 |
tatgtctgtcacacaatgtactgagccaaaaacctacaaagaagctagtcagtctgaatgttgg |
37193023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University