View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16811_low_32 (Length: 217)
Name: NF16811_low_32
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16811_low_32 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 11236384 - 11236224
Alignment:
| Q |
57 |
aaataatgtcctgattcaaaaatccgaaaatgagtatacaaaactcctacaatacactttagacgagggaaggaagatgaaactcaacaagaaggagaaa |
156 |
Q |
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| T |
11236384 |
aaataatgtcctggttcaaaaatccgaaaatgcgtatacaaaactcctacaatacactttagaggagggaaggaagatgaaactcaacaagaaggagaaa |
11236285 |
T |
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| Q |
157 |
aatggagtaaatggcagtcaaccacttttccgacgcggctgagatgaacttcggcacggtg |
217 |
Q |
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| T |
11236284 |
aatggagtaaatggccgtcaaccacttttccggcgcggcagaggtgaactccggcacggtg |
11236224 |
T |
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Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 57 - 213
Target Start/End: Complemental strand, 52610584 - 52610428
Alignment:
| Q |
57 |
aaataatgtcctgattcaaaaatccgaaaatgagtatacaaaactcctacaatacactttagacgagggaaggaagatgaaactcaacaagaaggagaaa |
156 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| || |||||||||| |
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| T |
52610584 |
aaataatgtccttattcaaaaatccgaaaatgagtatacaaaactcctacaatgcactttagaggagggaatgaagatgaaactcatcacgaaggagaaa |
52610485 |
T |
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| Q |
157 |
aatggagtaaatggcagtcaaccacttttccgacgcggctgagatgaacttcggcac |
213 |
Q |
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| T |
52610484 |
aatggagtaaatggccgtcaaccacttttccggcgcggtagaggtgaactccggcac |
52610428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 11761567 - 11761651
Alignment:
| Q |
77 |
aatccgaaaatgagtatacaaaactcctacaatacactttagacgagggaaggaagatgaaactcaacaagaaggagaaaaatgg |
161 |
Q |
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| T |
11761567 |
aatccgaaaatccgtatacaaaactcctacaatacactttagaggagggaaggaagatgaaactcaccaagaaggagaaaaatgg |
11761651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 23482554 - 23482685
Alignment:
| Q |
57 |
aaataatgtcctgattcaaaaatccgaaaatgagtatacaaaactcctacaatacactttagacgagggaaggaagatgaaactcaacaagaaggagaaa |
156 |
Q |
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||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
23482554 |
aaataatgtcctggttcaaaaatccgaaaatgcgtctacaaaactcctacaatacactttagaggagggaaggaagatgaaactcaccaagaaggagaaa |
23482653 |
T |
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| Q |
157 |
aatggagtaaatggcagtcaaccacttttccg |
188 |
Q |
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| T |
23482654 |
aatggagtaaatggtcgtcaaccaattttccg |
23482685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 34959981 - 34960019
Alignment:
| Q |
81 |
cgaaaatgagtatacaaaactcctacaatacactttaga |
119 |
Q |
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| T |
34959981 |
cgaaaatgtgtatacaaaactcctacaatacactttaga |
34960019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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