View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16811_low_8 (Length: 407)
Name: NF16811_low_8
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16811_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 33633647 - 33633271
Alignment:
| Q |
16 |
attttcaccgattaaataatcagattagttcgtaannnnnnnnncaatttttaatatgtatttttaacataaattagttctggatgtacatttcatattt |
115 |
Q |
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| T |
33633647 |
attttcaccgattaaataatcagattagttcgtaatttttttttcaatttttaatatgtatttttaacataaattagttctgggtgtacatttcatattt |
33633548 |
T |
|
| Q |
116 |
tgatgtgatgtgcggtttgagtcaagctgcaaattttgttattatgttaaaatatgaataaaacagtcaatttggccgcaattacaattacgttaccatt |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633547 |
tgatgtaatgtgcggtttgagtcaagctgcaaattttgttattatgttaaaatatgaataaaacagtcaatttggccgcaattacaattacgttaccatt |
33633448 |
T |
|
| Q |
216 |
gcgatactgctaaaacctagttgcaacaatcgggattgtggactgcaattttgaactaaaatgtgaggactgatttaactgaagaagttctattgtgttg |
315 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633447 |
gcgatactgctaaaacctagttgaaacaatcgggattgtggactgcaattttgaactaaaatgtgaggactgatttaactgaagaagttctattgtgttg |
33633348 |
T |
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| Q |
316 |
gagcaactcatatttttgaatgaacaacttaactatatttactatattttaacgtgacttaagaagttagtctattg |
392 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33633347 |
gagcaactcatatttttgaatgaccaacttaactatatttactatattttaacgtgacttaagaagttagtccattg |
33633271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 184 - 392
Target Start/End: Original strand, 29192467 - 29192671
Alignment:
| Q |
184 |
aatttggccgcaattacaattacgttaccattgcgatactgctaaaacctagttgcaacaatcgggattgtggactgcaattttgaactaaaatgtgagg |
283 |
Q |
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|||||||||| |||| ||||||| ||||| ||| | ||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| |
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| T |
29192467 |
aatttggccgtaattgcaattacattaccgttgagggacttctaaaacctagttgcaacaattgggattgtagactgcaattttgaactaaaatgttagg |
29192566 |
T |
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| Q |
284 |
actgatttaactgaagaagttctattgtgttggagcaactcatatttttgaatgaacaacttaactatatttactatattttaacgtgacttaagaagtt |
383 |
Q |
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|||||||||||||||| |||||||||| ||| |||||||||||||||||||| || ||||| ||||||||||| ||||||| ||||||| | ||||| |
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| T |
29192567 |
actgatttaactgaaggagttctattgcgttcgagcaactcatatttttgaaggatcaact----tatatttactagattttaatgtgacttgaaaagtt |
29192662 |
T |
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| Q |
384 |
agtctattg |
392 |
Q |
| |
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|||| |||| |
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| T |
29192663 |
agtccattg |
29192671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 29192407 - 29192441
Alignment:
| Q |
16 |
attttcaccgattaaataatcagattagttcgtaa |
50 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
29192407 |
atttacaccgattaaataatcagattagttcgtaa |
29192441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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