View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16811_low_9 (Length: 395)
Name: NF16811_low_9
Description: NF16811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16811_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 1334229 - 1334423
Alignment:
| Q |
1 |
atcaaacaagaatttgatatgagtgcttgtctctttagcatagacttactttgttttgttgtttgtcaaaactaggtctagcttaataggtatctatctg |
100 |
Q |
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| T |
1334229 |
atcaaacaagaatttgatatgagtgattgtctctttagcatagacttactttgttttgttgtatgtcaaaactaggtctagcttaataggtatc----tg |
1334324 |
T |
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| Q |
101 |
ctaccaaacattcactcaaacttaaatgtcaatgctacctagattgtttgaaattaatacaattgaacttgaattttaatttaagtctcaaagggcttg |
199 |
Q |
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| T |
1334325 |
ctaccaaacattcactcaaacttaaatgtcaatgctacctagattgtttgatattaatacaattgaacttgaattttaatttaagtctcaaagggcttg |
1334423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 232 - 385
Target Start/End: Original strand, 1334456 - 1334609
Alignment:
| Q |
232 |
agggcatgtttggaccgactctgcttatatattgacacaagagcattaaagcaccataccttatcaccaactttacattggtcaagaattctgtacaaat |
331 |
Q |
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| T |
1334456 |
agggcatgtttggactgactctgcttatatattgacacaagagcattaaagcaccataccttatcaccaactttacattggtcaagaattctgtacaaat |
1334555 |
T |
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| Q |
332 |
cactaccatgagtaaccttattaccattcacagatgctatgatgtcaccctatg |
385 |
Q |
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| T |
1334556 |
cactaccatgagtaaccttattaccattcacagatgctatgatgtcaccctatg |
1334609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 281 - 377
Target Start/End: Original strand, 1344443 - 1344539
Alignment:
| Q |
281 |
agcaccataccttatcaccaactttacattggtcaagaattctgtacaaatcactaccatgagtaaccttattaccattcacagatgctatgatgtc |
377 |
Q |
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| T |
1344443 |
agcaccataccttatcaccaactttacattggtcaagaattctgtacaaatcacttccattagcaaccttattaccattcacagatgttattatgtc |
1344539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 1342407 - 1342501
Alignment:
| Q |
65 |
gtcaaaactaggtctagcttaataggtatctatctgctaccaaacattcactcaaacttaaatgtcaatgctacctagattgtttgaaattaatacaat |
163 |
Q |
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| T |
1342407 |
gtcaaaactagatctagtttaataggtatat----gatacctaacattcattcaatctaaaatgtcaatgctggctagattgtgtgaaattaatacaat |
1342501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 1334199 - 1334228
Alignment:
| Q |
29 |
gtctctttagcatagacttactttgttttg |
58 |
Q |
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| T |
1334199 |
gtctctttagcatagacttactttgttttg |
1334228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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