View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16812_high_1 (Length: 393)
Name: NF16812_high_1
Description: NF16812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16812_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 47421801 - 47422170
Alignment:
| Q |
8 |
taattctaattcaaattcaatcaacttccagatccaaattccaccaccgttgatcatcgattctagctggaccaaccacgaacttcttgtactcttcaag |
107 |
Q |
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| T |
47421801 |
taattctaattctaattcaatcaacttccagatccaaattccaccaccgttgatcatcgattctagctggaccaaccacgaacttcttgtactcttcaag |
47421900 |
T |
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| Q |
108 |
atcacatctaccatccacaatttcttcccagatcaactcatcacatgggatcatgtctcaaggtaattacaattattatataaatgtttcattgatattt |
207 |
Q |
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| T |
47421901 |
atcacatctaccatccacaatttcttcccagatcaactcatcacatgggatcatgtctcaaggtaattacaattattatataaatgtttcattgatattt |
47422000 |
T |
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| Q |
208 |
ggttaattatgtcaatcgttgtgtgcagtaagctagctgagcttgggatcaagaagagtgctcaaaattgtaaggagaagtttgaacatgagaatgcatc |
307 |
Q |
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| T |
47422001 |
ggttaattatgtcaattgttgtgtgcagtaagctagctgagcttgggatcaagaagagtgctcaaaattgtaaggagaagtttgaacatgagaacgcatc |
47422100 |
T |
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| Q |
308 |
attttccccccggttcgttagcgagcttcaagatctttatcaaggtggtggtgttagtgttgacgaaaac |
377 |
Q |
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| T |
47422101 |
atttttcccccggttcgttagcgagcttcaagatctttatcaaggtggtggttttagtgttgacgaaaac |
47422170 |
T |
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