View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16812_low_2 (Length: 309)
Name: NF16812_low_2
Description: NF16812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16812_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 43915912 - 43915614
Alignment:
| Q |
1 |
tctcatctcaatcaaatgaactaaccatcttccaaatcaaaaccaacttcgtaagttaatatatcannnnnnnnn--aaggaattcgtattatatcaata |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
43915912 |
tctcatctcaatcaaatgaactaaccatcttccaaatcaaaaccaacttcataagtcaatatatcacttttttttttaaggaattcgtattatatcaata |
43915813 |
T |
|
| Q |
99 |
atttagtgtagaccacttaagttttagagggagcaacaattaagttattcagaaaatggtaataggaacaaaatatgttagtgggtgcgcctatccgaat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
43915812 |
atttagtgtagaccacttaagttttagagggagcaacaattaagttattcagaaaatggtaataggaacaaaatatgttattgggtgcgtctatccgaat |
43915713 |
T |
|
| Q |
199 |
ttaatacacgaagaatccgtccttgacgtccacgtatgccatttgccaagaacatgtgacaaaatatcacactcaaattatttatttactttttatatt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43915712 |
ttaatacacgaagaatccgtccttgacgtccacgtatgccatttgccaagaacatgcgacaaaatatcacactcaaattatttatttactttttatatt |
43915614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 43900582 - 43900507
Alignment:
| Q |
108 |
agaccacttaagttttagagggagcaacaattaagttattcagaaaatggtaataggaacaaaatatgttagtggg |
183 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
43900582 |
agaccacttaatttttagttggagcaacaatcaagttattcataaaatgctaataggaacaaaataagttagtggg |
43900507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 43900461 - 43900410
Alignment:
| Q |
235 |
tgccatttgccaagaacatgtgacaaaatatcacactcaaattatttattta |
286 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
43900461 |
tgccatttgccaagggcatgtgacaaaatatcacactcatatcgtttattta |
43900410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 43915959 - 43915930
Alignment:
| Q |
1 |
tctcatctcaatcaaatgaactaaccatct |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
43915959 |
tctcatctcaatcaaatgaactaaccatct |
43915930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University