View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16812_low_3 (Length: 279)
Name: NF16812_low_3
Description: NF16812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16812_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 2 - 271
Target Start/End: Complemental strand, 49158503 - 49158234
Alignment:
| Q |
2 |
ttaaaattatgtacacggatatgaaatatgaattacattctatttataatgtgatatatgatgcatatgcaattgtaggcaaactcagaggtgtctgcat |
101 |
Q |
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| T |
49158503 |
ttaaaattatgtacacggatatgaaatatgaattacattctatttataatgtgatatatgatgcatatgcaattgtaggcaaactcagaggtgtctgcat |
49158404 |
T |
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| Q |
102 |
tgcttggtcgcatcccatctgccgttggttatcaaccaacattgtctactgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49158403 |
tgcttggtcgcatcccatctgccgttggttatcaaccaacgttgtctactgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaat |
49158304 |
T |
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| Q |
202 |
tacctctgtccaagccatctatgtgcctgctgatgacttgacagatcctgctcctgctaccacctttgct |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49158303 |
tacctctgtccaagccatctatgtgcctgctgatgacttgacagatcctgctcctgctaccacctttgct |
49158234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 50 - 271
Target Start/End: Complemental strand, 49153526 - 49153304
Alignment:
| Q |
50 |
atgtgatatatgatgcat-atgcaattgtaggcaaactcagaggtgtctgcattgcttggtcgcatcccatctgccgttggttatcaaccaacattgtct |
148 |
Q |
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| T |
49153526 |
atgtgatatatgatgcctgatgtcactgtaggctaactcagaggtgtctgccctgcttggtcgtattccatctgcggttggttaccaaccaacattgtct |
49153427 |
T |
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| Q |
149 |
actgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacctctgtccaagccatctatgtgcctgctgatgacttgacagatc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
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| T |
49153426 |
actgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacatctgtccaggctatctatgtgcctgctgatgacttgacagatc |
49153327 |
T |
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| Q |
249 |
ctgctcctgctaccacctttgct |
271 |
Q |
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||||||||||||||||||||||| |
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| T |
49153326 |
ctgctcctgctaccacctttgct |
49153304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 27960569 - 27960615
Alignment:
| Q |
101 |
ttgcttggtcgcatcccatctgccgttggttatcaaccaacattgtc |
147 |
Q |
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| T |
27960569 |
ttgcttggtcgtatcccatcggctgttggttatcaaccaacactgtc |
27960615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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