View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16813_high_20 (Length: 219)
Name: NF16813_high_20
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16813_high_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 41988262 - 41988044
Alignment:
| Q |
1 |
atgtacatagactttattcgataatcacactaaacagtgtcattataatgataataatctttattcgaatcaaatggtgtcagtaagaattataattaga |
100 |
Q |
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| T |
41988262 |
atgtacatagactttattcgataatcacactaaacagtgtcattataatgataataatctttattcgaatcaaatggtgtcagtgagaattataattaga |
41988163 |
T |
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| Q |
101 |
atcattggtactgctactaatgcttagtttcttctcaaaagagaaatgcctttaagctttagacaattagtgcttatactctcaattgtagtaaactagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41988162 |
atcattggtactgctactaatgcttagtttcttctcaaaagagaaatgcctttaagctttagaccattagtgcttatactctcaattgtagtaaactagc |
41988063 |
T |
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| Q |
201 |
aatgttttcatatgaggca |
219 |
Q |
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||||||||||||||||||| |
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| T |
41988062 |
aatgttttcatatgaggca |
41988044 |
T |
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