View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16813_high_8 (Length: 391)
Name: NF16813_high_8
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16813_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 65 - 383
Target Start/End: Original strand, 28228681 - 28228999
Alignment:
| Q |
65 |
caatgttgactcttcacatatgttttgcatccgaaaacacgtaagtggtcataagaaatattcttacgcaaccaaatcatatctcgtacttcatattgca |
164 |
Q |
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| T |
28228681 |
caatgttgactcttcacatatgttttgcatccgaaaacacataagtggtcataagaaatattcttacgcaaccaaatcttatctcgtacttcatattgca |
28228780 |
T |
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| Q |
165 |
aggaaacgcttggtgaaagattcaagacatgcacaattgtgctcaatgcttcaccctaaaacgattttggaagatttgtctcgaacaaaaagcatttaac |
264 |
Q |
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| T |
28228781 |
aggacacgcttggtgaaagattcaagacatgcacaattgtgctcaatgcttcaccctaaaacgattttggaagatttgtctcgaacaaaaagcatttaac |
28228880 |
T |
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| Q |
265 |
cctttccaccaatgttatattaatgctctcaacaacaccatttaaacatagagacatctgatgtctaatccaattctctctacaataagcataaattttt |
364 |
Q |
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| T |
28228881 |
cctttccaccaatgttatattaatgctctcaacaacaccatttaaacatagagacatctgatgtctaatccaattctctctacaataagcataaattttt |
28228980 |
T |
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| Q |
365 |
gtcaaaagtatcctatgct |
383 |
Q |
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| T |
28228981 |
gtcaaaagtctcctgtgct |
28228999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 28227950 - 28227992
Alignment:
| Q |
17 |
agaagctgtaaatgagaacaccaaaatttttaacgtgaaaaac |
59 |
Q |
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| T |
28227950 |
agaagctgtagatgagaacaccaaaatttttaacgtgaaaaac |
28227992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 354
Target Start/End: Complemental strand, 50108549 - 50108462
Alignment:
| Q |
267 |
tttccaccaatgttatattaatgctctcaacaacaccatttaaacatagagacatctgatgtctaatccaattctctctacaataagc |
354 |
Q |
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| T |
50108549 |
tttcaaccaatgttctattcatcctctcggtaacaccactcaaacatagagacgtataatgtctaatctaattctctctacaataagc |
50108462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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