View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16813_low_11 (Length: 358)
Name: NF16813_low_11
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16813_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 2307802 - 2308141
Alignment:
| Q |
1 |
aaaatcattcagagaggggggaaagcagtaaagactgcaaaatctacacaaaagttcacatattccttcagagaactgcaataaagctgnnnnnnnttga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
2307802 |
aaaatcattcagagaggggggaaagcagtaaagactgcaaaatctacacaaaagttcacatattccttcagagaactgcaataaacctgaaaaaaattga |
2307901 |
T |
|
| Q |
101 |
ttacctcagagccatcttgtgggatattctctgaatttacttgtgaggttgacaccatctcactgcaactttcaaattctttaacaacctggataggatc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2307902 |
ttacctcagagccatcttgtgggatattctctgaatttacttgtgaggttgacaccatctcactgcaactttcaaattctttaacaacctggataggatc |
2308001 |
T |
|
| Q |
201 |
aggcatcaattgaggtgcacagttactatgatgccattgtgcaattttgttgatcaattgaggtagatcatttcctgcactatgatgccgaatttgtttg |
300 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2308002 |
aggcatcaattgaggtgcacagtcactatgatgccattgtgcaattttgttgatcaattgaggtagatcatttcctgcactatgatgccgaatttgtttg |
2308101 |
T |
|
| Q |
301 |
tgcattgggcatgttggagtaatgaagggagaaacaagag |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2308102 |
tgcattgggcatgttggagtaatgaagggagaaacaagag |
2308141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2317003 - 2317237
Alignment:
| Q |
1 |
aaaatcattcagagaggggggaaagcagtaaagactgcaaaatctacacaaaagttcacatattccttcagagaactgcaataaagctgnnnnnnnttga |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
2317003 |
aaaatcattcagagaggggggaaagcagaaaagaccgcaaaatctacacaaaagttcacatattccttcagagaactgcaataaacctgaaaaaaattga |
2317102 |
T |
|
| Q |
101 |
ttacctcagagccatcttgtgggatattctctgaatttacttgtgaggttgacaccatctcactgcaactttcaaattctttaacaacctggataggatc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| |
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| T |
2317103 |
ttacctcagagccatcttgtgggatattctctgaatttacttgtgaggttgacaccatctcactgcaattttcaacttctttaactacctggataggatc |
2317202 |
T |
|
| Q |
201 |
aggcatcaattgaggtgcacagttactatgatgcc |
235 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |
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| T |
2317203 |
aggcatcaattgaggtgcacagtcactatgatgcc |
2317237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 9359552 - 9359501
Alignment:
| Q |
288 |
ccgaatttgtttgtgcattgggcatgttggagtaatgaagggagaaacaaga |
339 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
9359552 |
ccgaatttgtttgtgcattgggcatgttggagtattgaagggagaaacaaga |
9359501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 43805345 - 43805397
Alignment:
| Q |
288 |
ccgaatttgtttgtgcattgggcatgttggagtaatgaagggagaaacaagag |
340 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||||||||| ||||| |
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|
| T |
43805345 |
ccgaatttgtctgtgcattgggtttgttggagtagtgaagggagaaataagag |
43805397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 41195321 - 41195274
Alignment:
| Q |
294 |
ttgtttgtgcattgggcatgttggagtaatgaagggagaaacaagaga |
341 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||| |||||| |
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|
| T |
41195321 |
ttgtttgtgcattgggcttgttggagtaatgaagctagaaataagaga |
41195274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 18233291 - 18233332
Alignment:
| Q |
291 |
aatttgtttgtgcattgggcatgttggagtaatgaagggagaa |
333 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
18233291 |
aatttgtttgtgcat-gggcatgttggagtaatgaggggagaa |
18233332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 10494323 - 10494270
Alignment:
| Q |
186 |
aacctggataggatcaggcatcaattgaggtgcacagttactatgatgccattg |
239 |
Q |
| |
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|||||||||| |||||| ||||||||||||| |||||| ||||| |||| |||| |
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| T |
10494323 |
aacctggataagatcagacatcaattgaggtacacagtcactataatgcaattg |
10494270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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